Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_C07
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    55   9e-09
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    55   9e-09
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   4.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -1

Query: 197 KFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           K+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 357 KWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -1

Query: 197 KFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
           K+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 357 KWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 199 KNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVF 101
           KNS+ PR   +    R+ L  L +  HS+R  F
Sbjct: 613 KNSINPRDKVIWHTRRKELAALKTGAHSQRCDF 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 950,305
Number of Sequences: 5004
Number of extensions: 14871
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)