Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_C04
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    32   0.50 
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     30   2.0  
11_06_0610 - 25449085-25453284                                         29   4.7  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   6.2  

>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = -1

Query: 688 PPRXHAXPGXGREKXXAGKXPPTNTRPXXPXPVPXXGRXGXGXXXRPXXXPXTXRXPT 515
           PPR     G G E       PP+N  P  P P P   R       +P   P     PT
Sbjct: 303 PPRTRFSAGSGAEMNKQMASPPSNPPPAPPPPPPPPSRFN-NTTPKPPPPPPPPEPPT 359


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -1

Query: 700 PEDAPPRXHAXPGXGREKXXAGKXPPTNTRPXXPXPVPXXGRXG 569
           P   PP   A    G +    G  PP++  P  P P P  G  G
Sbjct: 478 PAPIPPPGTAPSTDGAQNYPPGVTPPSSGAPTQPVPAPVYGTSG 521


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -1

Query: 700 PEDAPPRXHAXPGXGREKXXA-GKXPPTNTRPXXPXPVP 587
           P+  PP  ++ P          GK PPT T    P PVP
Sbjct: 531 PQAEPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVP 569


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/81 (24%), Positives = 20/81 (24%), Gaps = 3/81 (3%)
 Frame = -1

Query: 739 PXKXPXXXXGHAXPEDAPPRXHAXPGXGREKXXAGKXPPTNTR---PXXPXPVPXXGRXG 569
           P   P     H      PP  H  P         G  PP       P  P P P     G
Sbjct: 285 PAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAG 344

Query: 568 XGXXXRPXXXPXTXRXPTXXG 506
            G    P   P     P   G
Sbjct: 345 AGSGPPPPPPPAAPAAPRPPG 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,344
Number of Sequences: 37544
Number of extensions: 176950
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)