Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_B17
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.10 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.71 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   5.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 776 PPPPXXXKXXKXPPPPPPFFXXXXKKXXP 690
           PPPP      + PPPPPP +    K   P
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 777 PPPPXXXKXXKXPPPPPP 724
           PPPP   +    PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 740 PPPPPPFFXXXXKKXXPPXP 681
           PPPPPP F    +   PP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 773 PPPXXXKXXKXPPPPPPFFXXXXKKXXPPXP 681
           PPP        PPPPPP          PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -2

Query: 797 GGXFXXXPPPPXXXKXXKXPPPPPPFFXXXXKKXXPPXP 681
           GG     PPP         PPPPPP       +   P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/60 (33%), Positives = 20/60 (33%)
 Frame = +1

Query: 595 PPPPXXXXGGFXXXGGXXXXFFXXKKKXXGXGGXXFXXXXXKKGGGGGGXFXXFXXXGGG 774
           PPP     GGF   GG             G GG  F       GGG GG        GGG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG--FEGGPGGFGGGPGGFGGGLGGFGGG 257


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -2

Query: 776 PPPPXXXKXXKXPPPPPPFFXXXXKKXXPP 687
           PPPP   K  +  PPPP           PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,399
Number of Sequences: 5004
Number of extensions: 36161
Number of successful extensions: 272
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)