Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_B16
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   202   3e-52
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   199   2e-51
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.3  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   5.8  
06_03_0543 + 21967787-21970261                                         29   5.8  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.7  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  202 bits (493), Expect = 3e-52
 Identities = 90/151 (59%), Positives = 116/151 (76%)
 Frame = -3

Query: 772 NPRDVXVISSRPFGQRAVXKFAAHTGVTPIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQ 593
           NP+D+ V S+RP+GQRAV KFA +TG   IA R TPG FTNQ+Q +F EPRLLI+ DP  
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133

Query: 592 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 413
           DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTI 193

Query: 412 PRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 320
               +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 194 LPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  199 bits (486), Expect = 2e-51
 Identities = 88/147 (59%), Positives = 113/147 (76%)
 Frame = -3

Query: 772 NPRDVXVISSRPFGQRAVXKFAAHTGVTPIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQ 593
           NP+D+ V S+RP+GQRAV KFA +TG   IA R TPG FTNQ+Q +F EPRLLI+ DP  
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133

Query: 592 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 413
           DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTI 193

Query: 412 PRDQRWDVVVDLFFYRDPEESEKDEQQ 332
               +WDV+VDLFFYRDPEE+++ E++
Sbjct: 194 LPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 212 TRCSSCFWSTPCSRRMVCPGTR*VEHN 132
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 713 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 606
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 463 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 374
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 212 TRCSSCFWSTPCSRRMVCPGTR*VEHN 132
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,268,637
Number of Sequences: 37544
Number of extensions: 412234
Number of successful extensions: 1137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)