Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_B15
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    34   0.098
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    34   0.098
Z81085-4|CAB03113.2|  126|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.5  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.5  

>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 645 TNHPRLNIHFHQSPDXVXEGVRAGXKPP-LSSEAPSAYLTPSSLGMXKGVSP 493
           TNHP LN H  + P  +  G   G  PP L S   +A  TP   G    +SP
Sbjct: 147 TNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATPLISGKAGPMSP 198


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 645 TNHPRLNIHFHQSPDXVXEGVRAGXKPP-LSSEAPSAYLTPSSLGMXKGVSP 493
           TNHP LN H  + P  +  G   G  PP L S   +A  TP   G    +SP
Sbjct: 147 TNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATPLISGKAGPMSP 198


>Z81085-4|CAB03113.2|  126|Caenorhabditis elegans Hypothetical
           protein F46F3.3 protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 583 NSFXYGVRGLMEMDVKSGVVGVWNRDLMIGLMXP 684
           N+F Y  +G+ ++D   G+VG  + DL +G++ P
Sbjct: 33  NNFGYSEQGMKDLDEVGGLVGGGDSDL-LGILRP 65


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
 Frame = -1

Query: 663 QIPIP--YTNHPRLNIHFHQSPDXVXEGVRAGXKPPLSSEAPSAYLTP------SSLGM- 511
           +IP P  Y+N PR    FH+ P+ + +  +   +  LSS +P++  +P      S+L   
Sbjct: 110 EIPSPPTYSNQPRPLGDFHRDPNALSQ-FQQSREALLSSTSPTSNYSPINKFSSSTLTQY 168

Query: 510 -XKGVSPPYFQVNDESQASRLISRHSTHT 427
             K  SPP F  N  S+A+ +    S H+
Sbjct: 169 ANKSPSPPSFG-NSNSEATYVSPYSSKHS 196


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPP 490
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPP 490
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,400,374
Number of Sequences: 27780
Number of extensions: 325130
Number of successful extensions: 880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)