Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_B10
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0128 - 1043053-1043151,1043238-1043570,1043588-1043707,104...    35   0.099

>11_01_0128 -
           1043053-1043151,1043238-1043570,1043588-1043707,
           1043810-1043993,1044088-1044275,1044714-1044808,
           1044884-1045003,1045232-1045350,1052717-1052799,
           1052892-1053071
          Length = 506

 Score = 34.7 bits (76), Expect = 0.099
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 379 CXGGARVSRTALPAARHPRRSGASSPTSLILVTS 278
           C GG    R A P  R PR + AS PT+  LVTS
Sbjct: 84  CGGGRDTERQATPLRRSPRTATASPPTTKSLVTS 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,009,886
Number of Sequences: 37544
Number of extensions: 160992
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)