Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_B06
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopepti...    29   5.3  
AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide ...    29   5.3  
AL023828-29|CAA19454.2|  483|Caenorhabditis elegans Hypothetical...    28   7.0  
AF393636-1|AAM19304.1|  222|Caenorhabditis elegans cyclophilin-1...    28   7.0  

>AF142441-1|AAF66614.1|  701|Caenorhabditis elegans H+/oligopeptide
           symporter OPT-3 protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
 Frame = +3

Query: 27  PGAG-LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
           P  G + L R  +++ +     + + +   D   P+ RTEL   + + +  +K ++  ID
Sbjct: 379 PSLGRIYLQRVGNESLISDFRYKSDGRLIGDGMLPKGRTELDAGIYTFNTGLKNESQEID 438

Query: 204 LRDPN-GLRRRVSRFECETRLVK-SHCLEPTDSRGSTVSI 317
           +  PN G    V R +    +VK  + +E TD+  + V +
Sbjct: 439 ISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNGATRVFV 478


>AF003146-1|AAB54202.1|  701|Caenorhabditis elegans Oligopeptide
           transporter protein 3 protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
 Frame = +3

Query: 27  PGAG-LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
           P  G + L R  +++ +     + + +   D   P+ RTEL   + + +  +K ++  ID
Sbjct: 379 PSLGRIYLQRVGNESLISDFRYKSDGRLIGDGMLPKGRTELDAGIYTFNTGLKNESQEID 438

Query: 204 LRDPN-GLRRRVSRFECETRLVK-SHCLEPTDSRGSTVSI 317
           +  PN G    V R +    +VK  + +E TD+  + V +
Sbjct: 439 ISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNGATRVFV 478


>AL023828-29|CAA19454.2|  483|Caenorhabditis elegans Hypothetical
           protein Y17G7B.9 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 590 GRADIEGSKSNVAMNAWLPQASYPCGNFLALC 685
           G+  +E +  ++ +  W  +A   C NF+ LC
Sbjct: 13  GKVTLETTAGDIEIELWTKEAPLACRNFIQLC 44


>AF393636-1|AAM19304.1|  222|Caenorhabditis elegans cyclophilin-16
           protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 590 GRADIEGSKSNVAMNAWLPQASYPCGNFLALC 685
           G+  +E +  ++ +  W  +A   C NF+ LC
Sbjct: 13  GKVTLETTAGDIEIELWTKEAPLACRNFIQLC 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,688
Number of Sequences: 27780
Number of extensions: 364149
Number of successful extensions: 1028
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)