Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_B05
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 224 1e-59
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 221 1e-58
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 82 7e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 1e-07
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 38 0.002
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 35 0.011
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 34 0.026
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.059
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.10
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.18
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.32
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.32
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.55
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.97
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 28 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.9
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.0
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 224 bits (547), Expect = 1e-59
Identities = 99/127 (77%), Positives = 114/127 (89%), Gaps = 1/127 (0%)
Frame = -2
Query: 509 WLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 333
++A C RGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV
Sbjct: 316 YMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKV 375
Query: 332 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 153
RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+D
Sbjct: 376 NRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERD 435
Query: 152 YEEVGMD 132
YEEVG D
Sbjct: 436 YEEVGQD 442
Score = 149 bits (360), Expect = 6e-37
Identities = 66/87 (75%), Positives = 74/87 (85%)
Frame = -1
Query: 750 QIVSSITXSLXFDGAXNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 571
Q+VSSIT SL F G+ NVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EIT
Sbjct: 237 QVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEIT 296
Query: 570 NACFEPANQMVKCDPRHGKYMACCMLY 490
N CFEP NQMVKCDPR G+YMA C+LY
Sbjct: 297 NQCFEPYNQMVKCDPRTGRYMATCLLY 323
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 221 bits (539), Expect = 1e-58
Identities = 99/130 (76%), Positives = 113/130 (86%), Gaps = 1/130 (0%)
Frame = -2
Query: 518 ASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 342
A ++A C RGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++
Sbjct: 309 AGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEI 368
Query: 341 AKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 162
AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAAL
Sbjct: 369 AKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 161 EKDYEEVGMD 132
E+DYEEVG D
Sbjct: 429 ERDYEEVGQD 438
Score = 151 bits (367), Expect = 8e-38
Identities = 67/87 (77%), Positives = 75/87 (86%)
Frame = -1
Query: 750 QIVSSITXSLXFDGAXNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 571
Q+VSSIT SL F+G+ NVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EIT
Sbjct: 233 QVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEIT 292
Query: 570 NACFEPANQMVKCDPRHGKYMACCMLY 490
N CFEP NQMVKCDPR G+YMA C+LY
Sbjct: 293 NQCFEPYNQMVKCDPRAGRYMATCLLY 319
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 82.2 bits (194), Expect = 7e-17
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Frame = -2
Query: 488 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 309
RG V K+V+ I +++TK + FV+W P + PP DL + + +
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIG 369
Query: 308 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVG 138
N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G
Sbjct: 370 NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAG 429
Query: 137 MD 132
+D
Sbjct: 430 ID 431
Score = 77.8 bits (183), Expect = 2e-15
Identities = 32/86 (37%), Positives = 52/86 (60%)
Frame = -1
Query: 747 IVSSITXSLXFDGAXNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 568
+++ +T S F G N DL + N+VP+PR+HF +V +AP+ + + + +SV E+T
Sbjct: 232 VMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291
Query: 567 ACFEPANQMVKCDPRHGKYMACCMLY 490
F+ N MV DPRHG+Y+ L+
Sbjct: 292 QMFDANNMMVAADPRHGRYLTVAALF 317
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = -2
Query: 488 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 309
+G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + ML+
Sbjct: 325 QGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLA 379
Query: 308 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 147
N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 380 NHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = -1
Query: 747 IVSSITXSLXFDGAXNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAE 577
++S+ T +L + G N DL +L+P PR HF L +Y P + E + +V +
Sbjct: 235 VMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLD 294
Query: 576 ITNACFEPANQMVKCDP 526
+ P NQMV +P
Sbjct: 295 VMRRLLLPKNQMVSVNP 311
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 37.5 bits (83), Expect = 0.002
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Frame = -3
Query: 493 VPVVTS--YPRM*TRPSLP----SKPSVLSN-SSTGVQPVSRSVSTTSHPPWCPEATWPR 335
VP V S YP P+LP SKP V+ N V P +R + P+ ++P
Sbjct: 158 VPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHP-NRLPHPIHNHPYSSPTSYPP 216
Query: 334 FNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP--KPVRTWLPS 161
P+ CP+ PP L A+ SS S ++ + T + + P + WLP
Sbjct: 217 PLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPM 276
Query: 160 KRITKKSAWTPLKARVREPKS 98
+ T + P A V +P S
Sbjct: 277 TQPT----FQPPSANVYQPAS 293
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 496 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 353
A PVV P + RP++P P LS V PV+ V + PP P
Sbjct: 549 AAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 29.5 bits (63), Expect = 0.55
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 496 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 353
A PVV P + RP++P P S PV V + PP P
Sbjct: 639 AAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/65 (35%), Positives = 27/65 (41%)
Frame = -3
Query: 493 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSAC 314
VP V S P+ P +P PSV + V P SV P PEA + N P
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEA--GQLNEP-VV 699
Query: 313 CPTPP 299
P PP
Sbjct: 700 PPLPP 704
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = -3
Query: 496 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSA 317
A PV P RP+ P P S PV + PP P A VPS
Sbjct: 534 AAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAP----EVPSV 589
Query: 316 CCPTPP 299
P PP
Sbjct: 590 --PQPP 593
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 493 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 350
VP S P+ P +P PSV + V P + SV P PE
Sbjct: 628 VPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 675
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -3
Query: 493 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 350
VP S P+ P P PSV + V P + SV P PE
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 490 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 347
P V S P+ P +P PSV + V P SV P PEA
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 33.9 bits (74), Expect = 0.026
Identities = 28/101 (27%), Positives = 43/101 (42%)
Frame = -3
Query: 490 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 311
PVV + P T+P S P+ S + PVS + T + PP A R N A
Sbjct: 988 PVVQNKPAA-TKPV--SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAA 1042
Query: 310 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP 188
P + + A T S++ PS ++ +S + S+P
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.059
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 8/145 (5%)
Frame = -3
Query: 496 AVPVVTSYPRM*TRP-SLPSKPSVLSNSSTGVQPV---SRSVST-TSHPPWCPEATWPRF 332
+ P+ + P T S+P P+ S++ T P+ S S +T TS PP T
Sbjct: 244 STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTP 303
Query: 331 NVP---SACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS 161
VP ++ TPPP + TSS+ + SCT TS + +S PV +P
Sbjct: 304 TVPPTSTSSTSTPPPPASTS-STGTSSSPLPSTSTSCT-TSTSIPPTGNSTTPVTPTVPP 361
Query: 160 KRITKKSAWTPLKARVREPKSTKPV 86
+ S P + S+ P+
Sbjct: 362 TSTSSTSTPPPPASTSSTGTSSSPL 386
Score = 32.7 bits (71), Expect = 0.059
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Frame = -3
Query: 454 PSLPSKPSVLSNSSTGVQPVSRSVST-TSHPPWCPEATWPRFNVP---SACCPTPPPSLK 287
P P+ S SS+ + S S +T TS PP T VP ++ TPPP
Sbjct: 316 PPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 375
Query: 286 LGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPSKRITKKSAWTPLKARVRE 107
T+SS + S SCT TS + +S PV +P + T
Sbjct: 376 TSSTGTSSSPLLSTST-SCT-TSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSV 433
Query: 106 PKSTKPV 86
P ++ PV
Sbjct: 434 PYTSTPV 440
Score = 29.1 bits (62), Expect = 0.73
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = -3
Query: 490 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 311
P TS + P LP+ S +ST + P S S ++ P P T P + S
Sbjct: 152 PTSTSSTDTNSNP-LPTT-STSCTTSTSIPPTGGSSSLST--PITP--TVPPTSTSSTSI 205
Query: 310 PTPPPSLKL----GLALTTSSTSCTPSVLSCTGTS 218
P PP S L T+STSCT S TG S
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGS 240
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.10
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 325 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--KRI 152
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSA 193
Query: 151 TKKSAWTPLKARVREPKSTK 92
S+ TP+ V EP+ TK
Sbjct: 194 LGTSSKTPVYVVVDEPRFTK 213
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.18
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -3
Query: 433 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTS 254
S+L +S+ P+S + STT+ T ++ TP S+ + T +STS
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Query: 253 CTP--SVLSCTGTS 218
TP SV S T TS
Sbjct: 340 STPLSSVNSTTATS 353
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.32
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 433 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 257
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 256 SCTPSVLS 233
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.32
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 433 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 257
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 256 SCTPSVLS 233
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.55
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 445 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 281
P+ P + S P + S TS PP + P + P + P+ PPSL +G
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAPPSLPMG 442
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -3
Query: 451 SLPSKPSVLSNSSTGVQPVSRSVSTT-SHPPWCPEATWPRFNVPSACCPTPPPSLKLGLA 275
S P+ P + + S T PV S S PP P + P + + P PPS +
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 274 LTTSSTSCTP 245
L + P
Sbjct: 459 LPAGMPAAPP 468
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 382 STTSHPPWCPE--ATWPRFNVPSACCPTPPP 296
++TS PP P ++ P VPS P PPP
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPP 255
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.97
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = -3
Query: 481 TSYPRM*TRPSLP-SKPSVLSNSS--TGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 311
TS P PS P SKP S ++ V PV + +S+ + P P A P VPS
Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPK-LSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 310 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPV 179
P P P+ + ++S P + + + S PV
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
Score = 25.4 bits (53), Expect = 9.0
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = -3
Query: 493 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSAC 314
VP + P + +PS+ + P + S V PV P P P VPS
Sbjct: 1085 VPAPSGIPPV-PKPSVAAPP--VPKPSVAVPPVPAPSGAPPVPK--PSVAAPPVPVPSGA 1139
Query: 313 CPTPPPSL 290
P P PS+
Sbjct: 1140 PPVPKPSV 1147
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 689 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPLPRSQTHASSPPTR 543
P+++ P S + T +SS+P P N+ P P S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.9 bits (59), Expect = 1.7
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -2
Query: 656 VSTSHWSRTRQSSLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTRGDV 477
VS + S+ S P NSFPLP S+ + +P+ + +L +C
Sbjct: 67 VSLNSLSQKASSGSKIYPFKNSFPLPFSR-----------SILPIRSLAFLKLCVRHNST 115
Query: 476 VP-KDVNAA-IATIKTKRTIQ 420
VP KD A I+ I T T+Q
Sbjct: 116 VPSKDEQAQDISKINTNGTLQ 136
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 442 SKPSVLSNSSTGVQP--VSRSVSTTSHPPWC--PEATWPRFNVPSACCPTPPP 296
S P+ S++GV VS S S PP P A P ++PS P PPP
Sbjct: 141 SAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 391 RSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLS 233
++ S T+ P P ++ FN PSA P P++ + +T TPS S
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTT--TPSATS 503
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 451 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 365
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 9.0
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -3
Query: 484 VTSYPRM*TRPSLP--SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 311
+T+ R T+P+ P S+ +N + S S+ S P +A +VP +
Sbjct: 498 LTNKARNATQPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAFTKAGNEALSVPLSGA 557
Query: 310 PTPPPSLKLGLALTTSSTSCTPSVLSCTGT 221
S LA SS S +L C GT
Sbjct: 558 RNTAASRPTNLAAGNSSASIVQQLLECGGT 587
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 454 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 359
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,301
Number of Sequences: 5004
Number of extensions: 73554
Number of successful extensions: 309
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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