Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_B03
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 136 3e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 133 2e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 3e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.1
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.8
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 136 bits (329), Expect = 3e-33
Identities = 64/99 (64%), Positives = 76/99 (76%)
Frame = -1
Query: 619 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 440
RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLA
Sbjct: 122 RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLA 181
Query: 439 REVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 323
REVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 182 REVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 45.6 bits (103), Expect = 8e-06
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = -3
Query: 704 AHTGATXIAXRFTPGAFTNQIQAAFREP 621
AHTGAT IA RFTPG FTN I +REP
Sbjct: 94 AHTGATAIAGRFTPGNFTNYITRTYREP 121
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -2
Query: 765 ADVXVXSSRPFXQRAVLKFXXAHRCYAYCGTF 670
ADV V S+R + RAVLKF A G F
Sbjct: 74 ADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 133 bits (322), Expect = 2e-32
Identities = 63/97 (64%), Positives = 75/97 (77%)
Frame = -1
Query: 619 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 440
RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLA
Sbjct: 123 RLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLA 182
Query: 439 REVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 329
REVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 183 REVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 45.6 bits (103), Expect = 8e-06
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = -3
Query: 704 AHTGATXIAXRFTPGAFTNQIQAAFREP 621
AHTGAT IA RFTPG FTN I +REP
Sbjct: 95 AHTGATAIAGRFTPGNFTNYITRTYREP 122
Score = 32.3 bits (70), Expect = 0.078
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = -2
Query: 765 ADVXVXSSRPFXQRAVLKFXXAHRCYAYCGTF 670
ADV V SSRP+ RAVLKF A G F
Sbjct: 75 ADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = -1
Query: 658 LLLTRSKLHSVNLRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 479
L+ T K V L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 478 SSHSIGLMWWLLAR 437
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 372 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 411 FPVTSAGML--WLICSSTVTLKKVKRM 337
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,856
Number of Sequences: 5004
Number of extensions: 53476
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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