Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_B01
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 232 3e-61
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 225 4e-59
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.2
11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871 29 4.2
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 9.8
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 232 bits (567), Expect = 3e-61
Identities = 111/171 (64%), Positives = 129/171 (75%)
Frame = -3
Query: 626 RAXGYKGVTXRWHTKKLPP*DTPRVLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNK 447
+ GY+GV RW +LP T R LRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNK
Sbjct: 225 KGKGYEGVVTRWGVTRLPR-KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNK 283
Query: 446 KIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKK 267
K+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKK
Sbjct: 284 KVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKK 337
Query: 266 RIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
R++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 338 RVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 44.4 bits (100), Expect = 1e-04
Identities = 30/77 (38%), Positives = 41/77 (53%)
Frame = -1
Query: 784 KRRVHH*WKSXLTGSTIXGPK*XWAQRTFWRXXSXVDSVFAQDEMIDCIGVTQGPXDTKV 605
K++ H + + G TI K + + F+ VD+VF +DEMID IGVT+G V
Sbjct: 175 KQKKAHLMEIQINGGTI-ADKVDYGYK-FFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV 232
Query: 604 SLXVGTQRSYPRKTHQG 554
G R PRKTH+G
Sbjct: 233 VTRWGVTR-LPRKTHRG 248
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 225 bits (549), Expect = 4e-59
Identities = 107/163 (65%), Positives = 125/163 (76%)
Frame = -3
Query: 626 RAXGYKGVTXRWHTKKLPP*DTPRVLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNK 447
+ GY+GV RW +LP T R LRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNK
Sbjct: 225 KGKGYEGVVTRWGVTRLPR-KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNK 283
Query: 446 KIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKK 267
K+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKK
Sbjct: 284 KVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKK 337
Query: 266 RIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 138
R++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 338 RVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 44.4 bits (100), Expect = 1e-04
Identities = 30/77 (38%), Positives = 41/77 (53%)
Frame = -1
Query: 784 KRRVHH*WKSXLTGSTIXGPK*XWAQRTFWRXXSXVDSVFAQDEMIDCIGVTQGPXDTKV 605
K++ H + + G TI K + + F+ VD+VF +DEMID IGVT+G V
Sbjct: 175 KQKKAHLMEIQINGGTI-ADKVDYGYK-FFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV 232
Query: 604 SLXVGTQRSYPRKTHQG 554
G R PRKTH+G
Sbjct: 233 VTRWGVTR-LPRKTHRG 248
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 371 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871
Length = 148
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 504 RHPXRMPSSNAGNFPKNPW 560
R P RM S GNFP PW
Sbjct: 125 RPPLRMASPRGGNFPVGPW 143
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Frame = -3
Query: 512 RVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDLS 363
+V F + GY H + +N ++ I G IH+ D + E LS
Sbjct: 361 QVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYLS 420
Query: 362 EKSITPMGGFPHYGEVNN 309
EKS P+ FP V++
Sbjct: 421 EKSNIPIPPFPDSSSVSS 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,335,006
Number of Sequences: 37544
Number of extensions: 475278
Number of successful extensions: 1033
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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