Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_T7_A13
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    27   0.26 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.8  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    24   1.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   1.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   9.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 270 TKPTVPHNARRRLAVAGTHPDNRTGSNPREDPTGR 374
           T P +P   +R L     HP+   G  PR  P GR
Sbjct: 105 TAPPIPPEIQRALEWNAAHPEEDDGGQPR--PPGR 137


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 20/64 (31%), Positives = 22/64 (34%)
 Frame = +3

Query: 276 PTVPHNARRRLAVAGTHPDNRTGSNPREDPTGRRLRRHREWRIGATLRRLTTEPTAEHRA 455
           PT P   RR         +NR    P+  P   RLRR  E        R    P      
Sbjct: 25  PTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPR--- 81

Query: 456 PPHP 467
           PPHP
Sbjct: 82  PPHP 85


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 20/64 (31%), Positives = 22/64 (34%)
 Frame = +3

Query: 276 PTVPHNARRRLAVAGTHPDNRTGSNPREDPTGRRLRRHREWRIGATLRRLTTEPTAEHRA 455
           PT P   RR         +NR    P+  P   RLRR  E        R    P      
Sbjct: 26  PTRPTRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPR--- 82

Query: 456 PPHP 467
           PPHP
Sbjct: 83  PPHP 86


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 20/64 (31%), Positives = 23/64 (35%)
 Frame = +3

Query: 276 PTVPHNARRRLAVAGTHPDNRTGSNPREDPTGRRLRRHREWRIGATLRRLTTEPTAEHRA 455
           PT P   RR         +NR    P+  P   RLRR  E +      R    P      
Sbjct: 26  PTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPKAEPGNNRPIYIPQPR--- 82

Query: 456 PPHP 467
           PPHP
Sbjct: 83  PPHP 86


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 22/82 (26%), Positives = 33/82 (40%)
 Frame = +1

Query: 289 TMRAAGSPSPVPILTIGRDPIPGKIPQDVVSGDTVSGA*EPPCAASPRNRQQSTGRPRTQ 468
           TM   G    +P+  I   P P K P  +        A  PP   +P +R++S  R R +
Sbjct: 358 TMSEDGMIEVIPLSAI---PEPSKNPA-MGHWQMSCVACSPPPRQTPPSRKESGRRRRRR 413

Query: 469 YPTVPTGD*RGHRARVAHPAFF 534
            P   +       +R+  P FF
Sbjct: 414 TPRYNSVSKIDRASRIVFPLFF 435


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 521 WATRARCPR*SPVGTVGYWVRGRPVLCCRFRGE 423
           +A R RC     V     W   R  +CC+  GE
Sbjct: 51  YACRGRCSSYLQVSGSKIWQMERSCMCCQESGE 83


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 DNRTGSNPREDPTGRRLRRHREWRI 404
           D+ TG   R      RLRR REW I
Sbjct: 22  DSETGLRSRTQE--ERLRRRREWMI 44


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 DNRTGSNPREDPTGRRLRRHREWRI 404
           D+ TG   R      RLRR REW I
Sbjct: 22  DSETGLRSRTQE--ERLRRRREWMI 44


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 DNRTGSNPREDPTGRRLRRHREWRI 404
           D+ TG   R      RLRR REW I
Sbjct: 22  DSETGLRSRTQE--ERLRRRREWMI 44


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 DNRTGSNPREDPTGRRLRRHREWRI 404
           D+ TG   R      RLRR REW I
Sbjct: 22  DSETGLRSRTQE--ERLRRRREWMI 44


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 DNRTGSNPREDPTGRRLRRHREWRI 404
           D+ TG   R      RLRR REW I
Sbjct: 22  DSETGLRSRTQE--ERLRRRREWMI 44


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 DNRTGSNPREDPTGRRLRRHREWRI 404
           D+ TG   R      RLRR REW I
Sbjct: 22  DSETGLRSRTQE--ERLRRRREWMI 44


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 DNRTGSNPREDPTGRRLRRHREWRI 404
           D+ TG   R      RLRR REW I
Sbjct: 22  DSETGLRSRTQE--ERLRRRREWMI 44


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 DNRTGSNPREDPTGRRLRRHREWRI 404
           D+ TG   R      RLRR REW I
Sbjct: 22  DSETGLRSRTQE--ERLRRRREWMI 44


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -1

Query: 741  TRXVPALGAPAGRXHSRXWGGXFLAGCHCPHVRGREFVGGHGQILR 604
            T  VPA     G    R W G     C+      RE+  G G+ +R
Sbjct: 1309 TNRVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKGQGEQIR 1354


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -1

Query: 741  TRXVPALGAPAGRXHSRXWGGXFLAGCHCPHVRGREFVGGHGQILR 604
            T  VPA     G    R W G     C+      RE+  G G+ +R
Sbjct: 1305 TNRVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKGQGEQIR 1350


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 401 HRSHLAPPHH 430
           H SH A PHH
Sbjct: 433 HHSHAATPHH 442


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = -1

Query: 369 LWDLPGDWIPSYC 331
           LW + G W+  +C
Sbjct: 2   LWRMTGTWVGGFC 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,578
Number of Sequences: 438
Number of extensions: 5402
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)