Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_T7_A04
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.58
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.1
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 3.1
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 4.1
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.5
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 7.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 7.2
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 26 7.2
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 7.2
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 9.5
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.5
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 9.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.58
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = -3
Query: 666 SPIPYTNPPQT*HPFPSIPLTPY*KEFAPGLKPPXSSEAPSAYLTPSSLGMXKGVSPP 493
S +P PP + SIPL P + P PP APS P L + VS P
Sbjct: 334 SSLPPPPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPLSSSRAVSNP 388
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 257 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 162
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 652 HQPTPDLTSISINPPDAVLEGVR 584
++P P+ +S PPD+V EG++
Sbjct: 599 YEPIPNWADVSDLPPDSVREGIK 621
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +3
Query: 462 KLVIHHSLENKGAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKSG 641
K VI SLE + + P + L P ++T TPA+TP LM D +
Sbjct: 24 KGVIDASLEGNSSIMIDEIPES----DLPAPQVSTFPPTPAKTPKKQLLPNLMLQDRSNS 79
Query: 642 VGWCME 659
+ CME
Sbjct: 80 LERCME 85
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 474 HHSLENKGAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKS 638
H S NK A P P ++ P A TP+ SS A GL E++ KS
Sbjct: 511 HTSSLNKVAAAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKS 565
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 467 KLRALLVVIPRILRSPPPTHPLIEDV 390
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -3
Query: 684 INPIIKSPIPYTNPPQT*HPFPSI--PLTPY*KEFAPGLKPPXSSEAPSAYLTPSSLGMX 511
+ I SP+ TNP + P PS+ P P P P +S S L PS+
Sbjct: 359 VTAAIPSPLQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPASASPLAST-LKPSTANDT 417
Query: 510 KGVS 499
G S
Sbjct: 418 NGSS 421
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 356 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVL 222
K K+ D V K + +S T+ +V + YF PF+ V+
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVV 652
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 588 FAPGLKPPXSSEAPSAYLTPSSLGMXKGVSPPYFQ 484
F G +P +L P S+G+ G S P F+
Sbjct: 192 FILGWRPSDMDNGYDPFLNPDSIGVEHGFSDPVFR 226
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 495 GAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKSGV 644
G + + CP T+G +EP++ A+TP+S G+ + GV
Sbjct: 81 GGRVVHDCPTTKGIGYFLEPILILCLF--AKTPTSLTLTGVTSSNEDIGV 128
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 156 FSPSSEIYRQLVDPRHVSSDSF 91
+ P S+I +V P+HVS D+F
Sbjct: 94 YGPGSDIDTLVVVPKHVSRDNF 115
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 332 LVTHKELALKVSSIIGTRVYVFDPSCY 252
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 472 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 386
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -2
Query: 700 LRXRXHQPDHQIPDSIHQ----PTPDLTSISINPP 608
LR R ++P++ + D ++ P P T I+ NPP
Sbjct: 253 LRSRDNRPNYHLFDYYNEIASSPNPSTTKITYNPP 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,259
Number of Sequences: 5004
Number of extensions: 55426
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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