Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_P24
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 61 2e-10
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 29 0.64
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.85
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 29 1.1
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 27 2.6
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 2.6
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 3.4
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe... 27 4.5
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 26 6.0
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 7.9
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 7.9
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 61.3 bits (142), Expect = 2e-10
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Frame = +1
Query: 133 ALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSL 312
+L + +E+LY +KLW QLT L F P + + LY NF+ +F IN L
Sbjct: 23 SLQQSYILMEDLYERKLWKQLTDALIVFFDTP--ETVPLRLPLYTNFVNSFRPNINQLKA 80
Query: 313 VEIIAHIVEQYVNKRDAVTFLEKVETKV---KMNDE------ALALCKVLQGQIYIEQLN 465
V + E N +A+ L ++ ++ K D A+A K++ G++ E
Sbjct: 81 VYMGLKAFESCSND-EALRNLNQIVNELDEEKYKDAYVYSIVAIARIKLISGKLD-EARE 138
Query: 466 DYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYRVRGPTGRYYRAALRYVGC 633
A KII+H++ + +H +Y ++++YY+ + +YYR L Y+ C
Sbjct: 139 LLVKASKIIDHIDYV------ESLIHSSYYSVSADYYKAKADYAQYYRHCLLYLSC 188
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 29.5 bits (63), Expect = 0.64
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 157 LEELYNKKLWHQLTLKLQEFVKNPALQRGDNLI---QLYNNFLTTFESKINPLSLVEIIA 327
+E Y WH+L +LQ+ P L NL+ Q Y + F SKI + L E+ +
Sbjct: 81 IEPNYLLTAWHELWEELQDTYMTPILDSEANLLLLTQFYGKISSLFRSKIIQV-LEELQS 139
Query: 328 HIVEQYVNKRDAVTFLEKVET 390
I E + + + L +VE+
Sbjct: 140 RINEGEKDCQPVLDSLWEVES 160
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.1 bits (62), Expect = 0.85
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 331 IVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLEST 510
I E++ ++D F EK + N + + + L Q Y+ ++ DY E + + L+S
Sbjct: 3023 ITEEFAVEKDV--FGEKTVVDLIPNGRNIPVTE-LNKQNYVNRMVDYKLRESVKDQLKSL 3079
Query: 511 LEDADGVTPVH 543
L+ + P H
Sbjct: 3080 LDGFSDIIPSH 3090
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 238 RGDNLIQLYNNFLTTFESKINPLSLVEIIAH--IVEQYVNKRDAVTFLEKVETKVKMNDE 411
RG N+I L TT+ES+ NP SL+ + + + D ++ VK+N
Sbjct: 861 RGGNIIPLQQPGYTTYESRNNPYSLLIAMDNNGFASGSLYIDDGISMQTNSSLSVKLNSN 920
Query: 412 ALALCKVLQG 441
+ + V+ G
Sbjct: 921 SNTITCVVSG 930
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 145 DWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLV 315
DW + +Y + +TL N A+ RG N+I + LTT E+K NP L+
Sbjct: 829 DWYDHKVIYRQHN-ENITLSAPLTHINVAI-RGGNIIPMQKPSLTTHETKQNPYDLL 883
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 520 HLRVYFLNVQLFSRLHHNHSAVQCIFVLVAPYTEPVLH 407
HL FL+ +LF H +VQC L P P H
Sbjct: 189 HLFPQFLSAELFESASTVHRSVQCDNCLAHPIVGPRFH 226
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 379 KVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDAD 525
+V+ K+ + + L K + Y+ + YDA +K IE LES + D D
Sbjct: 834 EVDNKISIEETKL---KFMNVNSYV--MEQYDARKKEIEELESKMSDFD 877
>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -3
Query: 565 RLTYKIVRELESHHQHLRVYFLNVQLF---SRLHHNHSAVQCIFVLVAPYT 422
R Y+I+ + H L + F V L S+ + CI V V PYT
Sbjct: 51 RQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYT 101
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 427 KVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYR 579
KV +GQI ++Q++ + +KI L D D TP+ G L SE ++
Sbjct: 288 KVSKGQI-VQQVSVFSTGKKIESQSLLNLIDTDIETPLKGSSELLYSEDFK 337
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 313 VEIIAHI--VEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEK 486
V+++ ++ VE +RD VTF +E V + +A C + + + E L D E+
Sbjct: 80 VQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRDLVFEER 139
Query: 487 IIEHLEST 510
LE++
Sbjct: 140 KAILLETS 147
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 238 RGDNLIQLYNNFLTTFESKINPLSLV 315
RG +++ + LTT+ES+ NP +L+
Sbjct: 836 RGGSVLPMQQPSLTTYESRQNPFNLL 861
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,212
Number of Sequences: 5004
Number of extensions: 61420
Number of successful extensions: 184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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