Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_P24
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 126 3e-29
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971... 124 1e-28
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 31 0.90
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 30 2.1
07_03_1396 - 26259614-26259739,26259853-26259939,26260032-262604... 29 4.8
01_05_0804 + 25378929-25379036,25379209-25379526,25379914-25380546 29 6.3
09_04_0469 + 17864265-17864789,17865648-17865854,17865936-178661... 28 8.4
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 126 bits (303), Expect = 3e-29
Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 6/172 (3%)
Frame = +1
Query: 130 PALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLS 309
P LA +A L +LY +KLWHQLTLKL F++ PA Q GD LIQLYNNF+T FE+KIN L
Sbjct: 14 PELADPYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTLIQLYNNFITDFETKINLLK 73
Query: 310 LVEIIAHIVEQYVNKRDAVTFLEKVETKVKMN-----DEALALCKVLQGQIYIEQLNDYD 474
L QY +K A++FLE V TK++ +E + K+ I +E+ N +
Sbjct: 74 LAHFAVIASRQYPDKDAAISFLEGVITKLRETKDLRINEPILYVKMQIAAINLEKGNQKE 133
Query: 475 AAEKIIEHLESTLEDADGVTP-VHGRFYKLASEYYRVRGPTGRYYRAALRYV 627
+K+++ +STL+ V P VH Y ++S+Y++ R +Y+ AL Y+
Sbjct: 134 -CKKLLDEGKSTLDSMTDVDPTVHASLYWISSQYHKARQEFAEFYKNALLYL 184
>01_05_0085 -
17995800-17995985,17996724-17996823,17996919-17997115,
17997836-17997916,17998046-17998492,17998774-17998920
Length = 385
Score = 124 bits (298), Expect = 1e-28
Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 6/172 (3%)
Frame = +1
Query: 130 PALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLS 309
P LA +A L +LY +KLWHQLTLKL F++ PA Q GD +IQLYNNF++ FE+KIN L
Sbjct: 14 PDLADAYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTIIQLYNNFISDFETKINLLK 73
Query: 310 LVEIIAHIVEQYVNKRDAVTFLEKV-----ETKVKMNDEALALCKVLQGQIYIEQLNDYD 474
L QY +K A++FLE V ET+ + DE + K+ I +E+ D
Sbjct: 74 LAHFAVIASRQYPDKDAAISFLEGVTAKLRETRERRIDEPVLYVKMQIAAINLEK-GDQK 132
Query: 475 AAEKIIEHLESTLEDADGVTP-VHGRFYKLASEYYRVRGPTGRYYRAALRYV 627
+K+++ +STL+ V P VH FY ++S+Y++ +Y+ AL Y+
Sbjct: 133 ECKKLLDEGKSTLDSMTDVDPTVHASFYWISSQYHKACQEFAEFYKNALLYL 184
>07_03_0755 -
21261855-21261945,21262277-21262323,21262819-21263014,
21263239-21263340,21263602-21263678,21264037-21264236,
21264324-21264681,21265245-21265301,21265434-21266192,
21266287-21266468,21266651-21266813
Length = 743
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +1
Query: 148 WAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIA 327
+ ++ + K+ W LK + V L+R +++L + T SKI+PL+L + ++
Sbjct: 377 YERIAIMEKKQAWSNKELKYLQGVNERLLKR---VVELKGT-VKTLNSKIDPLTLDDSLS 432
Query: 328 HIVEQYVNKRDAV 366
VEQ + D +
Sbjct: 433 QFVEQCLGSEDVI 445
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 331 IVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLEST 510
+ E V VT E V+ + ++D+ + K +Q + E + AAE+ +EH +T
Sbjct: 1338 VQEPMVEDEKTVTTEETVQDPMVVDDKTMTTEKTVQDSMVEEGGTNIAAAEETVEHAAAT 1397
Query: 511 LEDADG 528
E G
Sbjct: 1398 AEALAG 1403
>07_03_1396 -
26259614-26259739,26259853-26259939,26260032-26260409,
26260497-26260692,26260794-26261032,26261132-26261272
Length = 388
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 196 TLKLQEFVKNPALQR-GDNLIQLYNNFLTTFESKINPLSLVEIIAHI 333
T+ L EF + A Q GDN +Q N +SK+ PLS ++ I++I
Sbjct: 169 TVHLSEFPNDFAAQSVGDNAVQTVGN-----QSKVTPLSWIDCISNI 210
>01_05_0804 + 25378929-25379036,25379209-25379526,25379914-25380546
Length = 352
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 517 DADGVTPVHGRFYKLASEYYRVRGPTGRYYRAALRYVGCXLRG*RPYLP 663
DAD + PVH +KL + +R R + AA+R C +G P LP
Sbjct: 265 DADHLQPVHFSSWKLLAHGFRFRYTLEDMFEAAVR--TCREKGLLPPLP 311
>09_04_0469 +
17864265-17864789,17865648-17865854,17865936-17866175,
17866705-17866771,17866872-17867015,17867202-17867297,
17867818-17867975,17868054-17868190,17868551-17868752
Length = 591
Score = 28.3 bits (60), Expect = 8.4
Identities = 29/119 (24%), Positives = 46/119 (38%)
Frame = +1
Query: 172 NKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVN 351
N K W Q+ +L F+K +G ++ Y+N +F S + P IA + V
Sbjct: 178 NFKEWKQVLQELGRFLKADGAYKGSRSLR-YDNLFDSFPSNLAP------IARFHSKRVL 230
Query: 352 KRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADG 528
K +VK + L ++LQ + E Y A K + T+ D G
Sbjct: 231 KLKEAVLTSYHRNEVKFTELTLDTFRMLQ-CLEWEPTGSYQIAAKELTE-NGTISDQSG 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,936,862
Number of Sequences: 37544
Number of extensions: 466629
Number of successful extensions: 945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -