Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_P24
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.6  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.4  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 390 RFHLLKECDSISLVDILF-HDMSNDLNQ**GIYFAFEGGQKVIVQLYEVVSPLQGR 226
           RF L+ +C  ++     F +   ND  +  GIYF  E  QK+ +       P + R
Sbjct: 63  RFKLVTDCIFVTSEPGYFLYTSKNDNEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 296 ILLSKVVKKLLYNCMRLSPL 237
           ++ +++  KLL NC+R+SP+
Sbjct: 19  VIPAELTAKLLGNCVRVSPV 38


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 538 VHGRFYKLASEYYRVR 585
           +HG F +    YY++R
Sbjct: 578 IHGNFIESLGNYYKIR 593


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 130 PALAADWAKLEELYNK 177
           P LAA+ AKLEE+  K
Sbjct: 287 PKLAANRAKLEEIAGK 302


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 651 PSPPXGAPNVPKRCAVVTASGTTDSV 574
           PSPP G   VP        S  +D +
Sbjct: 396 PSPPRGPGGVPTSVIQAATSSVSDDL 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,948
Number of Sequences: 438
Number of extensions: 5307
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)