Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_P18
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    31   0.19 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   1.4  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    28   1.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   7.3  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   7.3  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   9.6  

>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 539 SADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCSLTGR 369
           S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  L GR
Sbjct: 239 SKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDHLFGR 293


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 342  NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 232
            ++S   N++R+G L +G ++VC   GD +   LSC   G+
Sbjct: 885  DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 558 LPSGTRHQVRNGDRVLDIXKGRXAFGHTLGTLRLSLVTP 674
           LPS  R+ V+N + V+ +  G+   G  LGT     + P
Sbjct: 509 LPSDLRYFVKNVENVVSLNPGKATKGINLGTFAKLTIAP 547


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 29/116 (25%), Positives = 48/116 (41%)
 Frame = -2

Query: 513 RLLLPCAEREGHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYS 334
           R LL C +R    P +L   DV      ++DD + F+          T  GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163

Query: 333 YLHNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQVA 166
           + H+S      V+         E + L   DR       K++  P  N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 151 NNLTGRDLEEFNRIHFGRRNNLEI 222
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 121 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 231
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 480 HIPQLLETDDVNTLLAGNIDDLLDFIENC 394
           ++P+LLE  D+N L  G + + LD + NC
Sbjct: 222 NLPKLLERPDINDLHQGILQE-LDSLCNC 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,328
Number of Sequences: 5004
Number of extensions: 57889
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)