Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_P15
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    37   0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.11 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   2.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.0  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 557 PPPPXXXFXXP---PPPPPPXXXKKKKKK 480
           PPPP   F  P   PPPPPP   KK+K K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 557 PPPPXXXFXXPPPPPPP 507
           PPPP      PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 30.3 bits (65), Expect = 0.32
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 554 PPPXXXFXXPPPPPPP 507
           PPP      PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767



 Score = 28.7 bits (61), Expect = 0.98
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 557 PPPPXXXFXXPPPPPPP 507
           PPP       PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 28.7 bits (61), Expect = 0.98
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 557 PPPPXXXFXXPPPPPPP 507
           PPPP       PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 0.98
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 557 PPPPXXXFXXPPPPPPP 507
           PPP       PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 557 PPPPXXXFXXPPPPPPP 507
           P PP       PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 557 PPPPXXXFXXPPPPPPP 507
           PPPP        PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect(2) = 2.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 536 FXXPPPPPPP 507
           +  PPPPPPP
Sbjct: 368 YSPPPPPPPP 377



 Score = 21.4 bits (43), Expect(2) = 2.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 527 PPPPPPPXXXKKKKKK 480
           PPPPPP       K +
Sbjct: 372 PPPPPPELLNHSPKSR 387


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 527  PPPPPPPXXXKKKKKKXFXFFXXGG 453
            PPPPPPP    +KK      +   G
Sbjct: 1095 PPPPPPPPAEVEKKDLYLALYDFAG 1119


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 557 PPPPXXXFXXPPPPPPP 507
           PPPP      PP  PPP
Sbjct: 48  PPPPSVDHSAPPSGPPP 64


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 536 FXXPPPPPPP 507
           F  PPPPPPP
Sbjct: 944 FPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,563
Number of Sequences: 5004
Number of extensions: 17589
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)