Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_P13
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.4
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.1
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.1
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 27 4.1
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.5
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 7.2
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 9.6
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 9.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.6
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 9.6
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 276 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 392
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 78 VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 188
+ +QP+ K PSP F L+ + RS ET+L +A
Sbjct: 47 IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 506 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 402
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 64 AFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPIWRSSPMTP-PSTTRVGRRRCFID 240
+ P PS S + L + S+ + R+P RS P+TP TR ++
Sbjct: 75 SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133
Query: 241 DFRPQLPPWDSGSGS 285
DF P P++ S
Sbjct: 134 DFTPPSSPFEDMQAS 148
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.1
Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 7/171 (4%)
Frame = +1
Query: 43 PISSRGNAFPAP-SRHSRSPARLRPLPXYYSVCI-STIYP-----GLRRPIWRSSPMTPP 201
P S+ + P P + S + PLP + C ST P L PI + P T
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256
Query: 202 STTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRTPR*ASLSRLG 381
S+T + P + S S +T T S+ V P ++ S
Sbjct: 257 SSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTTPVTPTVPPTSTSS--- 312
Query: 382 ASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPS 534
+ TPPPP + S TS P S + +++ T+ TVPP+
Sbjct: 313 -TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362
Score = 26.6 bits (56), Expect = 4.1
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 8/138 (5%)
Frame = +1
Query: 43 PISSRGNAFPAP-SRHSRSPARLRPLPXYYSVCI-STIYPGLRRPIWRSSPMTPPSTTRV 216
P S+ + P P + S + PLP + C ST P +P PP++T
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS- 311
Query: 217 GRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVA----LRTPR*ASL--SRL 378
P P S +G+ +S L +S + TP ++ +
Sbjct: 312 -------STSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 364
Query: 379 GASITPPPPFAQSRCSTS 432
++ TPPPP + S TS
Sbjct: 365 SSTSTPPPPASTSSTGTS 382
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 337 VALRTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRY 516
+A R+ ++L + ++ +S S PY P S SP S ++ RY
Sbjct: 248 LAQRSGPTSALHKFATALQQQHQMQKSTSSNIPYANPAPSGFNGSPRNGDVASLASNYRY 307
Query: 517 ATVPPS 534
A PP+
Sbjct: 308 AKQPPT 313
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 153 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 323
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 324 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 413
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 458 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 363
F+L Y L E +W GG + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 644 YTCIGHDGAYASFVECHLISKGHFTSP 564
Y +G DG Y S EC S+ FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 3 LDSSYETTCRTVRSDIESRERVPGPVTSQPE 95
L+S YE + ++ D+ + +PG + S P+
Sbjct: 51 LESKYEVSVLPLKLDVSDLKSIPGVIESLPK 81
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 286 GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPP 405
GAS+ P R SS P AS++ +I PPP
Sbjct: 889 GASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPP 928
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 324 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIP---WAPKVKYLGVTLDSRMTF 494
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 495 RPHIKTVRDR 524
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,782
Number of Sequences: 5004
Number of extensions: 76558
Number of successful extensions: 255
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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