Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_P11
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.16
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 0.86
12_01_0524 - 4167867-4168445 29 3.5
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 29 4.6
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 6.0
12_02_1100 + 26077776-26077893,26078208-26078434 28 8.0
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 28 8.0
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.0
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 346 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 182
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -3
Query: 812 PXXXXPPGXQXXGXXPXXXGPRXPPXXPGGGXPXKXLXXSQXXXPPXPP 666
P PP G P P PP P P SQ PP PP
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 343 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 164
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 163 CEERVDHEGQ*C 128
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 250 VHRANTGRSSNELDRQTTELERRGVGLQHLADVLG 354
V+ A +SS+ L ++TTE++R G+G + + +G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIGSRVIRQGIG 405
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = -3
Query: 812 PXXXXPPGXQXXGXXPXXXGPRXPPXXPGGGXPXKXLXXSQXXXPPXPP 666
P PP P P PP P G P + + Q PP PP
Sbjct: 231 PPPPPPPKPANIAGAPGL--PLPPPPPPPPGPPPREIVPGQTLLPPPPP 277
>12_02_1100 + 26077776-26077893,26078208-26078434
Length = 114
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 359 SVPRTSAKCCSPTPLRSNSVVCRSNSFEDLPVFARWTRTHEC 234
S+P TS+ C +P+ S+++ ++ VF W H C
Sbjct: 4 SLPTTSSDICKTSPMASSNIYKVQDANNSSFVFTPWLCMHVC 45
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = -3
Query: 794 PGXQXXGXXPXXXGPRXPPXXPGGGXPXKXLXXSQXXXPPXPPFXXXDXHWTXPSXPT 621
PG Q P P PP P P L S P P D T P PT
Sbjct: 530 PGRQAASRAPSPPAPPSPPQDPAPSPPHDPLAPSLPQAPAATP--PQDPALTPPRAPT 585
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 79 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 219
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,743,578
Number of Sequences: 37544
Number of extensions: 512404
Number of successful extensions: 1421
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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