Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_P09
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.16
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 31 1.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.6
12_01_0524 - 4167867-4168445 29 3.4
07_03_1747 + 29188568-29188715,29188793-29189541 29 4.5
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.0
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 29 6.0
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 7.9
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.9
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.9
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 7.9
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 322 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 158
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 755 GXPXGEPGARXPXXXPGGGLPEXXXGXXP 669
G P G PG P PGGG P G P
Sbjct: 540 GFPGGMPGGGFPGGMPGGGFPGGMPGGFP 568
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 755 GXPXGEPGARXPXXXPGGGLPEXXXG 678
G P G PG P PGGG P G
Sbjct: 531 GFPGGMPGGGFPGGMPGGGFPGGMPG 556
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 653 GETPPWXXSXXXFPANPPPXXRXG-XGPXVRPXAPRXPVXXG 775
G TPP P PPP G GP P AP P+ G
Sbjct: 1171 GGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPG 1212
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 319 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 140
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 139 CEERVDHEGQ*C 104
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 375 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSS 518
PPP TT++ V L TA + S + QF+C+ TTC + S S
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESES 257
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 220 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 336
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/68 (33%), Positives = 23/68 (33%)
Frame = -2
Query: 783 GXXPXXTGXRGAXGRTXGPXPXRXXGGGFAGKXXXXXSXGGVSPXPRSWVCXGXXTGAXX 604
G P T G G G P GGG G S GG SP P GA
Sbjct: 117 GASPPVTPSPG--GGYGGGSPAPSHGGGAYGSSPSTPSGGGSSPTPSHGGGAYGGGGAPA 174
Query: 603 IPRS*XGH 580
P S GH
Sbjct: 175 TPASHDGH 182
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 226 VHRANTGRSSNELDRQTTELERRGVG 303
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 55 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 195
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 404 GRGERSPRRWLQPRLAVPRQASTSVPRTP 318
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 401 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 279
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,442,672
Number of Sequences: 37544
Number of extensions: 507174
Number of successful extensions: 1541
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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