Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_P07
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 72 1e-13
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 38 0.002
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.24
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 30 0.32
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 29 0.74
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.74
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.74
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.98
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 28 1.7
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.2
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 6.9
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 9.2
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 9.2
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.2
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 9.2
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 71.7 bits (168), Expect = 1e-13
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Frame = +3
Query: 519 HMRRVHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKG----DLDDTSHRGHPLCEFC 686
H + H +FFCDLCV + K+FT+E ++++ L H G DL+ T +GHP CEFC
Sbjct: 191 HAKVKHHKFFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFC 250
Query: 687 XKRFMDPDXLYR 722
F D D L++
Sbjct: 251 NTHFYDDDELFK 262
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 161 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFT 334
E +E C +C + + Y + C+H +C C+ R+R L EC C+ + V+ T
Sbjct: 73 EQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKTEWDTVLIT 130
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Frame = +2
Query: 110 YRNAFTES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQN 289
Y A E ++ ++ E + E C +CF + + C H C C M+ L
Sbjct: 145 YETAVAEF-LHMEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPC--LMQALTQSP 201
Query: 290 ECPICRKDLLRVVFTD--SIHPYKELGNREYPDRLFERQ 400
+CP CR L V + H YPD ERQ
Sbjct: 202 QCPTCRFGLPSPVVLEHAKSHSITTFLRDFYPDNWLERQ 240
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 161 EAQANENTCVVCF-KNVLYYSIGECDHPVCFEC 256
E +E TC +C+ + L + ECDH C C
Sbjct: 123 EVVHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 229 LAN*VVQNVLKTNYASILVRLSLRHDCCI 143
LA VVQNVL N +S+LV+ + R+ CI
Sbjct: 312 LAEPVVQNVLWVNTSSVLVQFTNRNSTCI 340
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 29.1 bits (62), Expect = 0.74
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Frame = +2
Query: 119 AFTES*INNTTIMSEAQANENTCVVCFKN---VLYYSIGEC-DHPVCFECSTRMRVLCLQ 286
A+ E IN + A+ E V N +L+ S+GE D + F CS+ +R+L +
Sbjct: 334 AYHEEEINPDNTIYRAKWEEYFGGVILHNAFFILHVSLGEVPDFHLLFHCSSDVRILQVV 393
Query: 287 NECPICRKDLL-----RVVFTDSIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAY 442
NE + + V++ D HP K L ++ +R + KI + +N Y
Sbjct: 394 NESMPIKSEFFILTTESVLWMDIQHPQKPLLEWKH-NRKLDPTLKITVTATFSQNIY 449
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.74
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +2
Query: 56 SKTNSXASTYSQFNKTLGYRNAFTES*INNT-TIMSEAQANENT--CVVCFKNVLYYSIG 226
S T + + + K+ N+ + I +T T++ Q + T C +C + +
Sbjct: 39 STTFASSDATQMYKKSRISSNSENKKQIPDTKTLLETFQKIKKTLECPICTEALQRPFTT 98
Query: 227 ECDHPVCFECSTRMRVLCLQNECPICRKDL 316
C H C+EC + L CP CR+ L
Sbjct: 99 HCGHTYCYEC--LLNWLKESKSCPTCRQKL 126
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 152 IMSEAQANENTCVVCFKNVLYYSIGECDHPVCFEC-STRMRVLCLQNECPICRK 310
+ S + + CV+C + S C H C C + + +CP+CR+
Sbjct: 195 VPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 28.7 bits (61), Expect = 0.98
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Frame = +2
Query: 50 YLSKTNSXASTYSQFNKTLGYRNAFTES*INNTTIMSEA--QANENTCVVCFKNVLYYSI 223
Y ++ A+ F++ G+R NN + ++TC +C +
Sbjct: 37 YNHPLHTAAAVKEAFSENRGFRTCHVCHRKNNMRLKVGTCESCKKHTCAICIRQC----- 91
Query: 224 GECDHPVCFECSTRMRVLCLQNECPIC 304
+C+ VC CS + R + CP C
Sbjct: 92 HKCESNVCSMCSKQERTFESEAFCPSC 118
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +2
Query: 146 TTIMSEAQANENTCVVCFKNVLYYSIGE-----CDHPVCFECSTRMR 271
TT ++ AN C +CF LYY C P+C EC +R
Sbjct: 138 TTAITTIYANAMECPICF---LYYPSNFNYTRCCAQPICSECFVEIR 181
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +2
Query: 176 ENTCVVCFKNVLYYS----IGECDHPVCFECSTRMRVLCLQNECPICR 307
+ C+VC N + +C+H EC + + QN CP+CR
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQW-LTSSQNSCPLCR 568
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +2
Query: 227 ECDHPVCFECSTRMRVLCLQNECPICR 307
+C H C+ C L CPIC+
Sbjct: 212 DCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 335 DSIHPYKELGNREYPDRLFERQYKIVF---CSEDIKNAYENLLENRCKICDKI 484
+++ YK Y DRLF++ VF +KNA +++LE+ K D I
Sbjct: 193 ENLDEYKSQAKSYYFDRLFDQNINKVFDVVPVTQVKNAPDDVLEDLFKNYDFI 245
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 436 IFYVFRTEYNFVLSFKQSIRVFPVPKLLVGMN-RISKYNPQ*IFTTYRTLILKTEHPHPS 260
I F+T+ + + +F V +VG + Y P+ F T++ + + PS
Sbjct: 338 ILIAFKTDSHKSTYIVDFVSLFEVLDEMVGKTIELHVYRPKRGFLTFQLTVQDLHNVTPS 397
Query: 259 RALETYGMV 233
R LE G V
Sbjct: 398 RFLEVGGAV 406
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -3
Query: 492 NGGILSQILHRFSN------KFSYAFFMSSEQN 412
NGGI+ Q+L SN KF+ FF++ + N
Sbjct: 91 NGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPN 123
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +2
Query: 287 NECPICRKDLLRVVFTDSIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAYENLLENRC 466
N CP+CR + L+V D + K R YP + E+ + E ++ E RC
Sbjct: 73 NTCPLCRTEFLKV---DVLEFVKGPWYRAYP--VEEKTQSVANAGEPFED--EGSETCRC 125
Query: 467 KICDK 481
IC +
Sbjct: 126 VICGR 130
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 313 IFTTYRTLILKTEHPHPSRALETYGM 236
+F YR L+ PH +RAL+ +G+
Sbjct: 57 LFPKYREKYLREVWPHVTRALDKFGI 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,053
Number of Sequences: 5004
Number of extensions: 66716
Number of successful extensions: 220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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