Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_P04
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   252   3e-69
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   252   3e-69

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  252 bits (617), Expect = 3e-69
 Identities = 130/201 (64%), Positives = 145/201 (72%), Gaps = 5/201 (2%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 582
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 583 XXXXXXXTSLCFVYPLDFART-----VSPPMSVRXMASVNSPVSETXSXXXXXXXXXXXC 747
                  TSLCFVYPLDFART     V      R    + + +++               
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLY---- 176

Query: 748 TEGSGVSVQGIIIYRAS*FGF 810
             G GVSVQGIIIYRA+ FGF
Sbjct: 177 -RGFGVSVQGIIIYRAAYFGF 196



 Score = 65.3 bits (152), Expect = 6e-13
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 645 RLAADVGKGXGQREFSGLGNXIXXIFKSDGLIGLYRGFG 761
           RLAADVGK  G+REF+GLGN +  IFK+DG+ GLYRGFG
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180



 Score = 28.7 bits (61), Expect = 0.069
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 250 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 429
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 430 LSFWRGNFANVIRYFPTQALNFAFKD 507
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 310 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 468
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  252 bits (617), Expect = 3e-69
 Identities = 130/201 (64%), Positives = 145/201 (72%), Gaps = 5/201 (2%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 582
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 583 XXXXXXXTSLCFVYPLDFART-----VSPPMSVRXMASVNSPVSETXSXXXXXXXXXXXC 747
                  TSLCFVYPLDFART     V      R    + + +++               
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLY---- 176

Query: 748 TEGSGVSVQGIIIYRAS*FGF 810
             G GVSVQGIIIYRA+ FGF
Sbjct: 177 -RGFGVSVQGIIIYRAAYFGF 196



 Score = 65.3 bits (152), Expect = 6e-13
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 645 RLAADVGKGXGQREFSGLGNXIXXIFKSDGLIGLYRGFG 761
           RLAADVGK  G+REF+GLGN +  IFK+DG+ GLYRGFG
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180



 Score = 28.7 bits (61), Expect = 0.069
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 250 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 429
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 430 LSFWRGNFANVIRYFPTQALNFAFKD 507
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 310 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 468
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,933
Number of Sequences: 438
Number of extensions: 4846
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)