Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_P02
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.31 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.31 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.9  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   5.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 16/68 (23%), Positives = 21/68 (30%)
 Frame = +2

Query: 728 PXPXXSPPGXGXRGXXPPRXXSXXXXXRPXXVPXSXQRAPXGXPXXPXSXXPXXPPXPXX 907
           P P   PP        P +         P   P +  ++P   P  P +  P  P  P  
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204

Query: 908 PPXXXPXA 931
           P    P A
Sbjct: 205 PLSQAPVA 212



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 864 PPXPXXXXSPPXRKXPRXXXPPPRXA 941
           PP P     PP    PR   PPP  A
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPA 155


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 270 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 371
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 27/122 (22%), Positives = 31/122 (25%), Gaps = 1/122 (0%)
 Frame = +1

Query: 562  PXSXAPXWXXPXXPXPXXCPPXXXPXG-XXXRXPXXAXPXXLRXVXGAXXPXXXIXXXXP 738
            P   AP    P  P P   PP   P G      P  A P   +    A  P        P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSV-AVPPVPAPSGAPP 1122

Query: 739  AQPPXLGXPWGXXPPXXVXXXPPAXXAXXXVXPTXTXGXPXXPXLXXSXXPPXPXXPPAX 918
               P +  P    P        P+  A     P+     P           P    PP  
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182

Query: 919  XP 924
             P
Sbjct: 1183 KP 1184



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 28/123 (22%), Positives = 31/123 (25%), Gaps = 2/123 (1%)
 Frame = +1

Query: 562  PXSXAPXWXXPXXPXPXXCPPXXXPXGXXXRXPXXAXPXXLRXVXGAXXPXXXIXXXXPA 741
            P   AP    P        PP   P G             +    GA           P 
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171

Query: 742  QPPXLGXPWGXXPPXXVXXXPPAXXAXXXVXPTXTXGXPXXPXLXXSXXPPXPXX--PPA 915
              P  G P    P   V   PP   A     P  + G P  P    +   P P    PP 
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPV--PKPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229

Query: 916  XXP 924
              P
Sbjct: 1230 PVP 1232



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 25/105 (23%), Positives = 27/105 (25%), Gaps = 2/105 (1%)
 Frame = +1

Query: 559  APXSXAPXWXXPXXPXPXXCPPXXXP--XGXXXRXPXXAXPXXLRXVXGAXXPXXXIXXX 732
            AP    P    P  P P   PP   P         P    P   +   G   P       
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV-PPVPPPSEA 1197

Query: 733  XPAQPPXLGXPWGXXPPXXVXXXPPAXXAXXXVXPTXTXGXPXXP 867
             P   P +G P    PP       P   A     P  T   P  P
Sbjct: 1198 PPVPKPSVGVP--PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 194 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 96
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 348 FPCVPTQSFVDPIHLKICQYPHGGL 274
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,057
Number of Sequences: 5004
Number of extensions: 41863
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)