Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_P01
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   199   2e-51
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U88167-5|AAB42227.1|  107|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  199 bits (485), Expect = 2e-51
 Identities = 104/206 (50%), Positives = 130/206 (63%)
 Frame = +2

Query: 125 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 304
           +VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESW
Sbjct: 8   TVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66

Query: 305 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPRRRWHXXXXXXXXXXXXXXX 484
           GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K  RRWH               
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126

Query: 485 XXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIP*GVQVS 664
                     QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI   V  S
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIE-KVYNS 185

Query: 665 XSSCW*RVKCXNRSSYPXVRGPLIIF 742
             +   + K  NR  +    GP++I+
Sbjct: 186 KRNRAGKGKLRNR-QHKQKLGPVVIY 210


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +2

Query: 242 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 412
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 413 PTKP 424
             KP
Sbjct: 197 APKP 200


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 568 GYNQGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 428
           GY  G + N+  N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 398 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 315
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>U88167-5|AAB42227.1|  107|Caenorhabditis elegans Hypothetical
           protein D2092.8 protein.
          Length = 107

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 412 PHEAPAALAPSRQPPTAESGLGGSRCCYRRP 504
           P+ APAA+AP   P  A  G+G     Y  P
Sbjct: 65  PYFAPAAIAPPPPPQGAVIGVGAQPAVYSAP 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,242,991
Number of Sequences: 27780
Number of extensions: 350489
Number of successful extensions: 1024
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)