Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_O21
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 286 CCPGSSARTYSPS*TLWPS 230
           CCPG   R Y P+    PS
Sbjct: 408 CCPGRVRRRYQPAFRCKPS 426


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 97  REDDIVYMPHIALLSIANVVSQNL 168
           REDD  ++PH ++    N V + L
Sbjct: 420 REDDARHIPHASVTDSENTVPRYL 443


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 370 RPSRSLHRSHTSDRSGR-ACRNKSI 299
           +PS + H SH S   GR AC +  +
Sbjct: 280 QPSLASHHSHLSSALGRSACHSPGV 304


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 343 DFDGDFETVYTGETDIRLSGLIDTYR 420
           D+DG +  + +GE  IR  G  D Y+
Sbjct: 152 DYDGKYLVLPSGELHIRDVGPEDGYK 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,224
Number of Sequences: 438
Number of extensions: 4431
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)