Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_O09
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   164   2e-41
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   159   4e-40
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    45   1e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.59 
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   1.0  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    26   7.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   7.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   9.7  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   9.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  164 bits (398), Expect = 2e-41
 Identities = 74/113 (65%), Positives = 91/113 (80%)
 Frame = +1

Query: 91  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 270
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 271 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREP 429
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREP 122



 Score =  127 bits (307), Expect = 2e-30
 Identities = 61/102 (59%), Positives = 72/102 (70%)
 Frame = +2

Query: 428 PRLLVVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 607
           PRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LL
Sbjct: 122 PRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLL 181

Query: 608 AREVLXLRGVLPRDQRWDVVVDLFFYRDPEXSERXNTSQGQA 733
           AREVL LRG + R   W+V+ DL+FYRDPE  ER    +  A
Sbjct: 182 AREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQKAAA 223


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  159 bits (386), Expect = 4e-40
 Identities = 70/117 (59%), Positives = 92/117 (78%)
 Frame = +1

Query: 79  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 258
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 259 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREP 429
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREP 121



 Score =  131 bits (317), Expect = 1e-31
 Identities = 64/102 (62%), Positives = 74/102 (72%)
 Frame = +2

Query: 428 PRLLVVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 607
           PRL+VV DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LL
Sbjct: 121 PRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLL 180

Query: 608 AREVLXLRGVLPRDQRWDVVVDLFFYRDPEXSERXNTSQGQA 733
           AREVL +RG L R   WDV+ DL+FYRDPE  ER   ++  A
Sbjct: 181 AREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKKAA 222


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 25/74 (33%), Positives = 38/74 (51%)
 Frame = +2

Query: 392 LLLTRSKLHSVNPRLLVVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 571
           L+ T  K   V P L+V+L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 572 SSHSIGLMWWLLAR 613
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 407 SKLHSVNPRLLVVLDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSS 577
           ++  ++ P + V+     D   +   T A    +  + LC+ +S  RF D+A+  NTK +
Sbjct: 49  ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFT 107

Query: 578 HSI 586
           H I
Sbjct: 108 HFI 110


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 214 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 390
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 97  RARLILPT-SLRLFELRLNAYNATGRRNGLKA 5
           R   ++P  S RL E     Y+A GR NGLKA
Sbjct: 112 RIEFVIPKGSDRLVESYSGFYDAIGRDNGLKA 143


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -1

Query: 773 FHGQXXXFGFAXPQPVPGLCSXFHFXQGPGRRTNQPQHPSAGHGEAHHEA 624
           FHG+     FA P P+P     F       R       PS+ H +   EA
Sbjct: 269 FHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEA 318


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 519 LHKAITGMLTYEASVMG*WSCAGSNT-TKRRGFTECSLDLVSKSTWCETSRNRRST 355
           L K IT  L    +++  +  A   T +K  GF E S  LVS+ T  E   N   T
Sbjct: 61  LKKRITDSLNERPNLLNKFMSAQDGTPSKSTGFNERSSQLVSEFTTTEDIENCEET 116


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -2

Query: 298 RTHQRGSRWLRQHEQPEQVFPRYDA 224
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,373
Number of Sequences: 5004
Number of extensions: 78863
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)