Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_O07
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    38   0.001
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    31   0.25 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   5.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.0  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   7.0  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +3

Query: 213 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 392
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 393 GSALSPLLFSLYINDI 440
           GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
 Frame = +1

Query: 328 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 504
           ++D+    RVP P  S   + K+PPS       I +  P L+ P   RSS  +P  T   
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243

Query: 505 GRRRCFIDDFRPQLPPWDSGSRKWRIDINPTKSTAVLFKRGRPPNTTLSIPS 660
             +   I D     PP    S + +++     ST    KR R   T  S P+
Sbjct: 244 SSKTFVIVDHSTPSPP----SIRTKLEAFAPNSTFATQKRLRRLATLESSPA 291


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 337 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 492
           + +++R   P+   P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 637  NTTLSIPSPD*GASINPAPAGSAQFTMFDXPHTGGPEGXI 756
            NT  + P P  G +  P+ AGS    MF   +T  P G I
Sbjct: 1044 NTATNNP-PSTGFTFTPSNAGSTAAPMFGAGNTPNPSGSI 1082


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 381 GVPQGSALSPLLFSLYINDI 440
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 569 REPLSHGGSCGLKSSMKQRLLPTRVVDGGVIGE 471
           RE L+HGGS  + + + Q LL  R+    +I E
Sbjct: 371 REDLNHGGSHKINNCIGQILLAKRLGKNRIIAE 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,743
Number of Sequences: 5004
Number of extensions: 77348
Number of successful extensions: 238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)