Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_O03
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   190   3e-49
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   189   4e-49
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    28   1.4  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   7.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  190 bits (462), Expect = 3e-49
 Identities = 86/120 (71%), Positives = 103/120 (85%)
 Frame = +3

Query: 36  CRTENFQHPVMGLWDYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 215
           C+ E  +H  +G    P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ D
Sbjct: 4   CKFEQPRHGSLGF--LPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61

Query: 216 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 395
           RPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 62  RPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121



 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 37/85 (43%), Positives = 57/85 (67%)
 Frame = +3

Query: 537 YKCXKKAFTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTPMKLLKQRQKKGHXME 716
           +K  KKAFTK +KK+ +    +SI ++ +++ +YCSVVRV+AHT ++     QKK H ME
Sbjct: 123 FKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 717 IQLNGXYHRGQSEWAKKHLEKPIPV 791
           IQ+NG     + EWA++H EK + +
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDI 205



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 35 MSHRKFSAPRHGSMG 79
          MSH KF  PRHGS+G
Sbjct: 1  MSHCKFEQPRHGSLG 15


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  189 bits (461), Expect = 4e-49
 Identities = 85/120 (70%), Positives = 103/120 (85%)
 Frame = +3

Query: 36  CRTENFQHPVMGLWDYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 215
           C+ E  +H  +G    P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ D
Sbjct: 4   CKFEQPRHGSLGF--LPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61

Query: 216 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 395
           RPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 62  RPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121



 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 37/85 (43%), Positives = 57/85 (67%)
 Frame = +3

Query: 537 YKCXKKAFTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTPMKLLKQRQKKGHXME 716
           +K  KKAFTK +KK+ +    +SI ++ +++ +YCSVVRV+AHT ++     QKK H ME
Sbjct: 123 FKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 717 IQLNGXYHRGQSEWAKKHLEKPIPV 791
           IQ+NG     + EWA++H EK + +
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDI 205



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 35 MSHRKFSAPRHGSMG 79
          MSH KF  PRHGS+G
Sbjct: 1  MSHCKFEQPRHGSLG 15


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 498 PSSLIVERRLLGNYMHKVTYSRHINKALIFREESSFCRSDVDSLQT 361
           P++ +   ++LGNY+  +T+   ++ A  F  E  +C+  +  + T
Sbjct: 580 PTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQGIHMIPT 624


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 467 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 342
           ++T+C    T  + + LSS E    FV +T + F   + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,540,285
Number of Sequences: 5004
Number of extensions: 73768
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)