Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N19
(841 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 45 8e-07
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 42 7e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 42 9e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 39 5e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 38 9e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 38 2e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 34 0.001
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 34 0.001
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 34 0.002
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 31 0.010
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 30 0.023
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 29 0.053
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 25 1.1
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 45.2 bits (102), Expect = 8e-07
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Frame = +2
Query: 68 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 226
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 227 VRILADLQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
+ L+ W D + + E+G T L V SE +W PD+VL N A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 41.9 bits (94), Expect = 7e-06
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 259
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 260 IDKRLSXNAGEWGCSTWLVSSERLWRPDVVLLN 358
+D+RL+ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 41.5 bits (93), Expect = 9e-06
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Frame = +2
Query: 56 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 214
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 215 SESTVRILADLQMNWIDKRLSXNAGEWG-CSTWLVSSERLWRPDVVLLNAA 364
T + ++ W D +L N ++G T V SE +W PD+VL N A
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.1 bits (87), Expect = 5e-05
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Frame = +2
Query: 86 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 244
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 245 LQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
++ +W D +L + E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 38.3 bits (85), Expect = 9e-05
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 277
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 278 XNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
N E+G L V SE +W PD+VL N A
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.5 bits (83), Expect = 2e-04
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 277
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 278 XNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
N E+G L ++ +LW+PD+++ N+A
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.5 bits (83), Expect = 2e-04
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 277
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 278 XNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
N E+G L ++ +LW+PD+++ N+A
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
++ E + A L++ W+D L N E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
++ E + A L++ W+D L N E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
++ E + A L++ W+D L N E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
++ E + A L++ W+D L N E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
++ E + A L++ W+D L N E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
++ E + A L++ W+D L N E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.1 bits (82), Expect = 2e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 277
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 278 XNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.1 bits (82), Expect = 2e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 277
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 278 XNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 34.3 bits (75), Expect = 0.001
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 164 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSXNAGEWG-CSTWLVSSERLWR 337
K+ VN L ++ N+ E ++ L+ W D +L + ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 338 PDVVLLNAAATTAGDYALR 394
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.001
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 167 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSXNAGEW-GCSTWLVSSERLWRPD 343
+V L+LH ++ E + + W D L NA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 344 VVLLNAA 364
+L N A
Sbjct: 92 TILYNNA 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 33.9 bits (74), Expect = 0.002
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Frame = +2
Query: 65 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 229
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 230 RILADLQMNWIDKRLSXNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
L++ W D + N ++G L + RLW+PDV++ N+A
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSA 116
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 31.5 bits (68), Expect = 0.010
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +2
Query: 101 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 265
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 266 KRLSXNAGEWGCSTWLVSSERLWRPDVVLLN 358
RLS S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 30.3 bits (65), Expect = 0.023
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 259
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 260 IDKRLSXNAGEWGCSTWLVSSE---RLWRPDVVLLN 358
D RL+ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.1 bits (62), Expect = 0.053
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 259
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 260 IDKRLSXNAGEWGCSTWLVSSE---RLWRPDVVLLN 358
D RL+ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.6 bits (51), Expect = 1.1
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +2
Query: 674 PXPXXPXPHPXRXXTPXGPPXPXPXPXXRXXPPXQGXXXVAPRAXSSXPXXSP 832
P P P P +P P P P PP G P S SP
Sbjct: 16 PSSGAPGPQPSPHQSPQAPQRGSP-PNPSQGPPPGGPPGAPPSQNPSQMMISP 67
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/36 (27%), Positives = 12/36 (33%)
Frame = +1
Query: 694 PPSXSXPNPXRPXXPPXXPQXPXXPAPPGXXXXRXP 801
P P + PP Q P PPG + P
Sbjct: 25 PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 310 PSAAAPFPCVPTQS 269
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,858
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 40
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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