Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N16
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 283 2e-77
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 281 1e-76
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 2e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.79
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 2.4
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.2
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 27 4.2
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 5.6
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 26 5.6
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 25 9.7
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 25 9.7
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 283 bits (694), Expect = 2e-77
Identities = 133/210 (63%), Positives = 161/210 (76%)
Frame = +1
Query: 82 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVV 261
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL + WEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 262 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 441
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 442 PAQDHQPITEASYANIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 621
P D Q I EAS+ NIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 622 GVLPREQRWDVVVDWSFYRDPEXSEKDEQQ 711
G + R W+V+ D FYRDPE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 281 bits (688), Expect = 1e-76
Identities = 130/219 (59%), Positives = 164/219 (74%)
Frame = +1
Query: 70 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAA 249
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL + WEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 250 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 429
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 430 IVLDPAQDHQPITEASYANIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 609
+V DP D Q I EAS+ NIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 610 LRLRGVLPREQRWDVVVDWSFYRDPEXSEKDEQQAREQA 726
LR+RG L R WDV+ D FYRDPE E++E+ + A
Sbjct: 185 LRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKKAAA 223
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 44.4 bits (100), Expect = 2e-05
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Frame = +1
Query: 115 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVAIENPADVF 288
+L++ HLG N + ++Y +R +G H+I+L + L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 289 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 405
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 406 ----AFREPRLLIVLDPAQDHQPITEASYANIPVIALCNTDSPLRFVDIAIPCNTKSSHS 573
++ P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 574 IGLMWWLLAR 603
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 29.1 bits (62), Expect = 0.79
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 340 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYANIPVIAL 504
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 505 CNTDSPLRFVDIAIPCNTKSSHSI 576
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 574 IGLMWWLLAREVLRLRGVLPREQRWD 651
IGL W L REV R + + RE+ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 468 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 289
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 288 EHISGVLDG 262
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +1
Query: 205 VINLRRAWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 381
V+++R W +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -1
Query: 668 DQSTTTSQRCSRG---STPRSLSTSRANNHHIKPIE 570
++S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 406 AFREPRLLIVLDPAQDHQPITEASYA 483
A R+ RLL+++ P H P+ YA
Sbjct: 62 AGRDDRLLLIVGPCSLHDPVAAKEYA 87
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 639 FTGKHTTKPQHFTCQQPPHQTNRVGRLGVAW 547
FTG + K F+ +Q + T+ + +LGV W
Sbjct: 416 FTGNYDFKAAGFSEEQLRNLTSDMAKLGVCW 446
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 622 GVLPRE--QRWDVVVDWSFYRDPEXSEKDEQQA-REQAVVQLXKXXAPVHETGMK 777
G L RE W ++DW+F+ + S D Q+ +++ V + E GM+
Sbjct: 383 GRLVRELGPHWRDIIDWAFFMNTLISNSDIQRLNKDEEVTWFHVLVKHIEEYGME 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,560,448
Number of Sequences: 5004
Number of extensions: 79605
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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