Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N09
(798 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein. 31 3.6
Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine r... 30 8.4
X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine ... 30 8.4
X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor ga... 30 8.4
U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine r... 30 8.4
L08485-1|AAA58490.1| 462|Homo sapiens GABA-benzodiazepine recep... 30 8.4
BT009830-1|AAP88832.1| 462|Homo sapiens gamma-aminobutyric acid... 30 8.4
BC113422-1|AAI13423.1| 462|Homo sapiens gamma-aminobutyric acid... 30 8.4
BC111979-1|AAI11980.1| 462|Homo sapiens gamma-aminobutyric acid... 30 8.4
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 30 8.4
BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor, n... 30 8.4
BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor, n... 30 8.4
BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor, n... 30 8.4
AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine ... 30 8.4
AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein. 30 8.4
>AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein.
Length = 1383
Score = 31.5 bits (68), Expect = 3.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 395 HGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPPA 276
HG + SP W Q + + P + P P +CCS P A
Sbjct: 256 HGGRDCSPTCWEQGKCSGPAEQEKRGPSFPKECCSQGPTA 295
>Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 415
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine
receptor beta-3 subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 415
V SE LW PD+VL NA G + V +NG+V
Sbjct: 70 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 106
>X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor gamma
chain precursor protein.
Length = 520
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 106 MIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---RESESTVRIQADLQMNWIDKRLS 270
++ L+ YD + P + VVN++L L N+ E E + ++M W D RL
Sbjct: 32 LLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLR 91
Query: 271 WN 276
W+
Sbjct: 92 WD 93
>U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 415
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>L08485-1|AAA58490.1| 462|Homo sapiens GABA-benzodiazepine receptor
alpha-5-subunit protein.
Length = 462
Score = 30.3 bits (65), Expect = 8.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 435 TLALQFSMQLDNWPXDMQTCTXKFGSRMXXSDEM 536
T++ + MQL+++P D C KFGS + E+
Sbjct: 168 TISAECPMQLEDFPMDAHACPLKFGSYAYPNSEV 201
>BT009830-1|AAP88832.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5 protein.
Length = 462
Score = 30.3 bits (65), Expect = 8.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 435 TLALQFSMQLDNWPXDMQTCTXKFGSRMXXSDEM 536
T++ + MQL+++P D C KFGS + E+
Sbjct: 168 TISAECPMQLEDFPMDAHACPLKFGSYAYPNSEV 201
>BC113422-1|AAI13423.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5 protein.
Length = 462
Score = 30.3 bits (65), Expect = 8.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 435 TLALQFSMQLDNWPXDMQTCTXKFGSRMXXSDEM 536
T++ + MQL+++P D C KFGS + E+
Sbjct: 168 TISAECPMQLEDFPMDAHACPLKFGSYAYPNSEV 201
>BC111979-1|AAI11980.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5, precursor protein.
Length = 462
Score = 30.3 bits (65), Expect = 8.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 435 TLALQFSMQLDNWPXDMQTCTXKFGSRMXXSDEM 536
T++ + MQL+++P D C KFGS + E+
Sbjct: 168 TISAECPMQLEDFPMDAHACPLKFGSYAYPNSEV 201
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 106 MIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---RESESTVRIQADLQMNWIDKRLS 270
++ L+ YD + P + VVN++L L N+ E E + ++M W D RL
Sbjct: 29 LLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLR 88
Query: 271 WN 276
W+
Sbjct: 89 WD 90
>BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 415
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 415
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 415
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine
receptor beta-3 subunit precursor protein.
Length = 458
Score = 30.3 bits (65), Expect = 8.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSV 415
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein.
Length = 520
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 106 MIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---RESESTVRIQADLQMNWIDKRLS 270
++ L+ YD + P + VVN++L L N+ E E + ++M W D RL
Sbjct: 32 LLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLR 91
Query: 271 WN 276
W+
Sbjct: 92 WD 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,793,526
Number of Sequences: 237096
Number of extensions: 2238996
Number of successful extensions: 7086
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6990
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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