Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N09
(798 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.001
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 31 0.016
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 30 0.022
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.050
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.050
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.066
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 28 0.12
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.15
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.15
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.15
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.20
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.27
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.27
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.27
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.27
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.27
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.35
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.47
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 24 1.4
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 24 1.4
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 24 1.9
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 2.5
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 4.3
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 5.7
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 79 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 243
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 244 MNWIDKRLSWNA 279
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 85 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 252
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 253 IDKRLSWNAG 282
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
Score = 27.5 bits (58), Expect = 0.15
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 426 SAWTLALQFSMQLDNWPXDMQTCTXKFGS 512
S T+ M L+N+P D Q C +FGS
Sbjct: 122 SRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 30.7 bits (66), Expect = 0.016
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +1
Query: 106 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 264
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 265 LSWNAGGVGLQHL 303
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
Score = 23.4 bits (48), Expect = 2.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 435 TLALQFSMQLDNWPXDMQTCTXKFGSRMXXSDEM 536
+L L M L +P D Q C+ + S +D++
Sbjct: 155 SLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDL 188
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 30.3 bits (65), Expect = 0.022
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
+ RLW+PDV++ N+A G Y V NNG+
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Score = 22.2 bits (45), Expect = 5.7
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 58 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 222
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 223 RIQADLQMNWIDKRLSWNAGGVG 291
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.1 bits (62), Expect = 0.050
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 291
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEMD 539
+P D Q C KFGS +++D
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVD 208
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.1 bits (62), Expect = 0.050
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 291
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEMD 539
+P D Q C KFGS +++D
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVD 208
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.066
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEMD 539
+P D Q C KFGS +++D
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVD 140
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.12
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +1
Query: 106 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 264
++D++L YD P D VV + + +R + I + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDER 94
Query: 265 LSWNAGGVGLQHL 303
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
Score = 23.4 bits (48), Expect = 2.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 435 TLALQFSMQLDNWPXDMQTCTXKFGSRMXXSDEM 536
+L L M L +P D Q C+ + S +D++
Sbjct: 155 SLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDL 188
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAA 358
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 456 MQLDNWPXDMQTCTXKFGS 512
+ ++ +P D QTC KFGS
Sbjct: 147 IDVEYFPFDEQTCFMKFGS 165
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA 358
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
Score = 25.0 bits (52), Expect = 0.81
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 453 SMQLDNWPXDMQTCTXKFGS 512
S+ ++ +P D+QTC K GS
Sbjct: 154 SIDVEFFPYDVQTCVLKLGS 173
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 287 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 195
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA 358
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
Score = 25.0 bits (52), Expect = 0.81
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 456 MQLDNWPXDMQTCTXKFGS 512
+ ++ +P D QTC KFGS
Sbjct: 155 IDVEYFPFDEQTCVLKFGS 173
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 287 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 195
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA 358
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
Score = 25.0 bits (52), Expect = 0.81
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 456 MQLDNWPXDMQTCTXKFGS 512
+ ++ +P D QTC KFGS
Sbjct: 151 IDVEYFPFDEQTCVMKFGS 169
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.1 bits (57), Expect = 0.20
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 284 EWGCSTWL-VSSERLWRPDVVLLNAA 358
E+G T L V SE +W PD+VL N A
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNA 113
Score = 25.8 bits (54), Expect = 0.47
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEMDXXD*QQN 560
+P D QTC KFGS ++D QN
Sbjct: 152 FPFDQQTCFMKFGSWTYDGIQIDLKHINQN 181
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.27
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEMD 539
+P D Q C KFGS +++D
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVD 140
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.27
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEMD 539
+P D Q C KFGS +++D
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVD 140
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.27
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEMD 539
+P D Q C KFGS +++D
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVD 140
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.27
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEMD 539
+P D Q C KFGS +++D
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVD 140
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.27
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 412
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLSWNAGGVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 456 MQLDNWPXDMQTCTXKFGSRMXXSDEMD 539
M + +P D Q C KFGS +++D
Sbjct: 113 MDIAWFPFDDQHCDMKFGSWTYDGNQVD 140
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.35
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAA 358
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
Score = 23.4 bits (48), Expect = 2.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 456 MQLDNWPXDMQTCTXKFGSRMXXSDEMD 539
+ ++ +P D Q+C KFGS ++D
Sbjct: 160 INVEYFPFDEQSCIMKFGSWTYNGAQVD 187
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.8 bits (54), Expect = 0.47
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 157 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNA---GGVGLQHL 303
K+ VN L ++ N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
Score = 25.8 bits (54), Expect = 0.47
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 471 WPXDMQTCTXKFGSRMXXSDEM 536
+P D QTC KFGS D++
Sbjct: 158 FPFDQQTCIMKFGSWTFNGDQV 179
Score = 25.0 bits (52), Expect = 0.81
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 317 ERLWRPDVVLLNAAATTAGDYALR 388
+++W+PD+VL N A G+Y +R
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVR 126
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 24.2 bits (50), Expect = 1.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 435 TLALQFSMQLDNWPXDMQTCTXKFGS 512
T+ + M+L N+P D Q+C GS
Sbjct: 157 TIKAKCPMELRNFPMDRQSCPLILGS 182
Score = 23.4 bits (48), Expect = 2.5
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = +2
Query: 317 ERLWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSXIKRLDI 439
ER+WRPD N + + R+S +G + RL I
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTI 158
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 24.2 bits (50), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3
Query: 468 NWPXDMQTCTXKFGSRMXXSDEMD 539
+WP D C FGS + +E++
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVN 198
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA 358
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 426 SAWTLALQFSMQLDNWPXDMQTCT 497
S TL L +M+ +++P D Q C+
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICS 147
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.4 bits (48), Expect = 2.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 435 TLALQFSMQLDNWPXDMQTCTXKFGSRMXXSDEM 536
TL L +M +P D Q C + S +DEM
Sbjct: 158 TLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEM 191
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 22.6 bits (46), Expect = 4.3
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 157 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGGVGLQHLAGVL----GTL 324
+ ++N L + + + ++ + D + N + + S AGGV + AG++ GTL
Sbjct: 239 RAIINTLLSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMMCQPVGTL 298
Query: 325 V 327
+
Sbjct: 299 I 299
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 432 WTLALQFSMQLDNWPXDMQTCTXKFGS 512
+T L M L +P D Q CT + S
Sbjct: 155 FTTTLACMMDLHYYPLDSQNCTVEIES 181
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,464
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 64
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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