Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_N08
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    98   1e-21
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    98   1e-21
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   2.7  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   6.2  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   8.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 41/53 (77%), Positives = 47/53 (88%)
 Frame = +2

Query: 68  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 226
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVR 58



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 24/29 (82%), Positives = 28/29 (96%)
 Frame = +3

Query: 234 DRPGSKINKKEIVEAVTIIETPPMVCVGV 320
           DRPGSK++K+EI+EAVTIIETPPMV VGV
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGV 89


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 41/53 (77%), Positives = 47/53 (88%)
 Frame = +2

Query: 68  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 226
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVR 58



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 23/29 (79%), Positives = 28/29 (96%)
 Frame = +3

Query: 234 DRPGSKINKKEIVEAVTIIETPPMVCVGV 320
           DRPGSK++K+EI+EAVT+IETPPMV VGV
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGV 89


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 56  RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 175
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 373 HLXXGGKSHGGVXQCIQPTPTQTIGGVSMMVTASTI 266
           H+  GG  H G  +C      QT   +S ++T STI
Sbjct: 353 HIFSGG--HDGTIRCWSLPANQTSDSISKILTGSTI 386


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 223 NHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 62
           N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P   V  IF
Sbjct: 346 NVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,350
Number of Sequences: 5004
Number of extensions: 33440
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)