Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N07
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 160 2e-40
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 87 3e-18
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 54 2e-08
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 53 5e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 52 1e-07
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 51 2e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 51 2e-07
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 51 2e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 48 2e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 47 4e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 46 8e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 3e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 42 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 5e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 40 5e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 5e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 39 7e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.012
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.012
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.036
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.062
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.062
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 32 0.11
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.14
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.19
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.25
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.77
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 1.0
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.8
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.3
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 3.1
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 3.1
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 7.1
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 9.4
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 160 bits (389), Expect = 2e-40
Identities = 72/132 (54%), Positives = 102/132 (77%), Gaps = 1/132 (0%)
Frame = +1
Query: 238 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQK-NLDVGANVFIGNLDPEVDEK 414
+GF EF+ E+D +YA +++N +KL+GKP+RVN+AS + N +GAN+F+GNLDP VDE+
Sbjct: 54 FGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDER 113
Query: 415 LLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISX 594
+LYDTFSA G +++ P+V RD E G SK + F+++ SFE +DAAIEAMNNQ+L N+PI+
Sbjct: 114 VLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITV 172
Query: 595 SYAFXXDVXGXR 630
SYAF + G R
Sbjct: 173 SYAFKREGKGER 184
Score = 76.6 bits (180), Expect = 4e-15
Identities = 30/52 (57%), Positives = 43/52 (82%)
Frame = +3
Query: 93 ERNQDATIYVGGLDDRXTESLLWELFVQSGPVVNVHMPKDRVTQTHQGLWIC 248
+RNQDATIY+G LD++ T+S+L+EL +Q+GPVVN+H+P+DRV +H G C
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFC 57
Score = 35.5 bits (78), Expect = 0.009
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +1
Query: 370 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 549
A +++GNLD +V + +L++ G ++ + RD + F F F + + A
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNI-HIPRDRVRNSHNGFGFCEFLHEQDVEYAC 69
Query: 550 EAMNNQYLCNRPISXSYA 603
+ +N L +PI + A
Sbjct: 70 QILNQVKLFGKPIRVNRA 87
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKA 339
+ YGFV + E AD AI+ MN L KP+ V+ A
Sbjct: 140 KGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 87.0 bits (206), Expect = 3e-18
Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Frame = +1
Query: 238 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGA-NVFIGNLDPEVDEK 414
Y +V F ED + A+ +N + G+P R+ + +G NVFI NLDP +D K
Sbjct: 123 YAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNK 182
Query: 415 LLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPI 588
L+DTFSAFG IL KV D E GN+K + F++F S E+++AAIE +N L ++ +
Sbjct: 183 ALHDTFSAFGKILSC-KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 64.5 bits (150), Expect = 2e-11
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASA-HQKNLDV-------------- 366
R +GFV + E A A+ +N + GK + V +A H++ ++
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK 360
Query: 367 --GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASD 540
G N+FI NL EVD++ L FSAFG I + K+M D E G SK F F+ + + E ++
Sbjct: 361 YQGVNLFIKNLQDEVDDERLKAEFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEEAN 418
Query: 541 AAIEAMNNQYLCNRPISXSYAFXXDV 618
A+ MN + L +P+ + A +V
Sbjct: 419 KAVTEMNQRMLAGKPLYVALAQRKEV 444
Score = 58.4 bits (135), Expect = 1e-09
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Frame = +1
Query: 211 IE*LRHIRXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRV-NKASAHQKNLDVGA----- 372
++ L + + YGFV F E A+ AI+ +N + L K V V + S ++ V A
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Query: 373 -NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 549
NV+I NLD E+ E+ D F FG I +++D + + F F+N+A+ E + A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSL-SLVKD-QNDKPRGFGFVNYANHECAQKAV 318
Query: 550 EAMNNQ 567
+ +N++
Sbjct: 319 DELNDK 324
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/89 (26%), Positives = 46/89 (51%)
Frame = +1
Query: 319 PVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK 498
P + + A++++G LDP V E +L++ F++ G + +V RD T S
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASI-RVCRDAVTRRSL 121
Query: 499 AFAFINFASFEASDAAIEAMNNQYLCNRP 585
+A++NF + E + A++ +N + RP
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRP 150
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +3
Query: 78 AGPIAERNQDATIYVGGLDDRXTESLLWELFVQSGPVVNVHMPKDRVTQTHQG 236
A P A++YVG LD TE++L+ELF GPV ++ + +D VT+ G
Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLG 122
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 114 IYVGGLDDRXTESLLWELFVQSGPVVNVHMPKDR 215
+Y+ LD TE +LF Q G + ++ + KD+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ 296
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 54.4 bits (125), Expect = 2e-08
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Frame = +1
Query: 238 YGFVEFMGEEDADYAIKVMNM-IKLYGKPVRVNKASA---HQKNLDVGA--NVFIGNLDP 399
Y FVEF +A A+ + N I ++N AS +K++ + ++F+G+L P
Sbjct: 136 YCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSP 195
Query: 400 EVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCN 579
V+E +Y F++ ++ K+M DP+T S+ + F+ F +A+ M Q +
Sbjct: 196 NVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGD 255
Query: 580 RPISXSYA 603
RPI A
Sbjct: 256 RPIRVGLA 263
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQK 354
R YGFV F E D A+ M +P+RV A+ K
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSK 268
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 52.8 bits (121), Expect = 5e-08
Identities = 30/78 (38%), Positives = 41/78 (52%)
Frame = +1
Query: 370 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 549
A V +GNL P V E LLY+ F FG I+ + E +++AF+ F E + A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISV--ALHRKEKAVDRSYAFVEFDEPEDAKEAM 63
Query: 550 EAMNNQYLCNRPISXSYA 603
E MN LC+R I S A
Sbjct: 64 ENMNYSILCDRCIRVSPA 81
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 108 ATIYVGGLDDRXTESLLWELFVQSGPVVNV 197
AT++VG L TESLL+ F+ G +++V
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISV 35
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 342
R Y FVEF EDA A++ MN L + +RV+ A+
Sbjct: 46 RSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPAN 82
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 52.0 bits (119), Expect = 1e-07
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = +1
Query: 355 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 534
++ G VF+GN+ +V E+ + + F+ G + +T K++ DPETG+ K + F F E
Sbjct: 2 SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPV-KTFKLVLDPETGSGKGYGFCEFFDSET 60
Query: 535 SDAAIEAMNNQYLCNRPISXSY 600
+ A+ +NN L R I +
Sbjct: 61 TAMAVRKLNNSELGPRKIRVEF 82
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 114 IYVGGLDDRXTESLLWELFVQSGPVVNVHMPKDRVTQTHQGLWIC 248
++VG + +E + E+F Q GPV + D T + +G C
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFC 53
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRV 330
+ YGF EF E A++ +N +L + +RV
Sbjct: 48 KGYGFCEFFDSETTAMAVRKLNNSELGPRKIRV 80
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 51.2 bits (117), Expect = 2e-07
Identities = 30/82 (36%), Positives = 47/82 (57%)
Frame = +1
Query: 337 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 516
+S HQ D A ++IGNLD +++E + FS FG + ++RD ETG SK FAF+
Sbjct: 21 SSWHQDYSD-SAYIYIGNLDFDLNEDDILCVFSEFGEPVDI-NLVRDKETGKSKGFAFLK 78
Query: 517 FASFEASDAAIEAMNNQYLCNR 582
+ ++ A++ M N L +R
Sbjct: 79 YEDQRSTVLAVDNMTNVKLLDR 100
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/88 (28%), Positives = 50/88 (56%)
Frame = +1
Query: 340 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 519
SA + + ++G ++F+ + + E L FS FG + ++MR+P T S+ F F++F
Sbjct: 91 SAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHV-RIMREPVTKASRGFGFLSF 149
Query: 520 ASFEASDAAIEAMNNQYLCNRPISXSYA 603
++ E + +AI+ +N+Q R ++ A
Sbjct: 150 STVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKA 339
R +GF+ F E+A AI +N + YG+ + V KA
Sbjct: 142 RGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/76 (34%), Positives = 46/76 (60%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 555
+F+GNL +V+++ LY FS + +++T KV+RD E G ++ F F++F + A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKT-KVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 556 MNNQYLCNRPISXSYA 603
N +Y+ +RP+ S A
Sbjct: 90 KNGKYIGSRPVKLSRA 105
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 328 VNKASAHQKNLDVGANV-FIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAF 504
+ K + KNL V ++G L EK + FS FG +L+ ++ R+ +TG+SK +
Sbjct: 90 IKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRL-RMSRNRKTGSSKHY 148
Query: 505 AFINFASFEASDAAIEAMNNQYL 573
AFI F S + ++ E M+N L
Sbjct: 149 AFIEFESLDVANVVAETMHNYLL 171
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 96 RNQDATIYVGGLDDRXTESLLWELFVQSGPVVNVHMPKDRVT 221
+ + +YVG L E + F Q GPV+ + M ++R T
Sbjct: 101 QKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKT 142
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.8 bits (106), Expect = 4e-06
Identities = 25/92 (27%), Positives = 48/92 (52%)
Frame = +1
Query: 316 KPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 495
+P ++ K S VF+G L VD++ L F +G I+ +V+ D ++G S
Sbjct: 248 RPAKITKPSQDSNET---CTVFVGRLSWNVDDQWLGQEFEEYGTIVGA-RVIMDGQSGRS 303
Query: 496 KAFAFINFASFEASDAAIEAMNNQYLCNRPIS 591
K + +++F + EA+ AA+ A + + R ++
Sbjct: 304 KGYGYVDFETPEAAKAAVAANGTKEIDGRMVN 335
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 45.6 bits (103), Expect = 8e-06
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN-KASAHQKNLDVGAN----------V 378
R G V ++A +AI++++ G+ + V AH K D+ + +
Sbjct: 223 RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDCI 282
Query: 379 FIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAM 558
++GNL ++ L D F+ G +++ ++ +P TG SK F + F + + ++IE +
Sbjct: 283 YVGNLPWATSDRNLLDLFTDIGSVIRA-RIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 559 NNQYLCNRPISXSYA 603
N RP+ SYA
Sbjct: 341 NGYRYGGRPLQLSYA 355
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 3e-05
Identities = 31/102 (30%), Positives = 48/102 (47%)
Frame = +1
Query: 244 FVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 423
++ F A A+ +N + +RV+ S H D VF+GNL E +E+ L+
Sbjct: 230 YIVFRDSSSARSALS-LNGTMFMDRHLRVDSVS-HPMPQDTKRCVFVGNLAFEAEEEPLW 287
Query: 424 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 549
F G I +++RDP+T K FA+I F D A+
Sbjct: 288 RYFGDCGSI-DYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 555
+F+ L+P ++ L FS FG I+ +V+RD ETG+S +AFI F + E+ + A
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISC-QVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 556 MNN 564
M N
Sbjct: 305 MQN 307
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 519
+FIG L+ E + L D F FG +L VMRD TG S+ F F+ F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCT-VMRDSTTGRSRGFGFLTF 211
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/106 (22%), Positives = 51/106 (48%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDE 411
R +GF+ F + + + + L GK + +A ++ + A +F+G + + E
Sbjct: 204 RGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAIPREEQ-EKTAKMFVGGVPGDCTE 260
Query: 412 KLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 549
+ + F+ FG +L +M D +TG + F F+ + + A +A +
Sbjct: 261 EEFRNFFNQFGRVLDAT-LMMDKDTGRPRGFGFVTYENESAVEATM 305
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.5 bits (88), Expect = 5e-04
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKN-LDVGAN----------- 375
R YGFV F EDA A K + KL+G+ +R++ A+ +++ +D N
Sbjct: 46 RGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDN 105
Query: 376 ---VFIGNLDPEVDE-KLLYDTFSAFGVILQTPKVMRDPETGNSK--AFAFINFASFEAS 537
+ I NL + + + L FS FG + + ++ P G + FAF+ +A+
Sbjct: 106 RPRLIIRNLPWSIKKPQHLEPHFSKFGKV----REIKIPTKGGGRMCGFAFVWMKDRKAA 161
Query: 538 DAAIEAMNNQYLCNRPISXSYAFXXD 615
+ A+ ++N + RPI+ +A D
Sbjct: 162 EEAMNSLNGTEIDGRPIAVDWAVSKD 187
Score = 33.1 bits (72), Expect = 0.047
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 519
VF+ NL E E+ LY+ F FG L K+++DP T S FI F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGP-LAYAKLVKDPATDRSLGRGFIKF 325
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 39.5 bits (88), Expect = 5e-04
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Frame = +1
Query: 238 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN------KASAHQKNLD----VGANVFIG 387
+GFVEF + A A+ MN L G + + A+A + D G + I
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIK 726
Query: 388 NLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQ 567
NL E +K + A+G L++ +V + + +++ FAF F + + A+ A+ N
Sbjct: 727 NLPFEATKKDVQSLLGAYGQ-LRSVRVPKKFDR-SARGFAFAEFVTAREAANAMRALKNT 784
Query: 568 YLCNRPISXSYA 603
+L R + YA
Sbjct: 785 HLLGRHLVLQYA 796
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +1
Query: 340 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 519
S ++ D A + + NL + E+ L D F FG I Q + +D ETG +K FAF+
Sbjct: 192 SMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGI-QRVYLAKDKETGRAKGFAFV-- 248
Query: 520 ASFEASDAAIEA 555
S+ D AI+A
Sbjct: 249 -SYYDRDCAIKA 259
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 93 ERNQDATIYVGGLDDRXTESLLWELFVQSGPVVNVHMPKDRVTQTHQG 236
ER+ AT+ V L D E L +LF + G + V++ KD+ T +G
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKG 244
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +1
Query: 337 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 516
AS + + +F+GNLD E + L + F G I + ++M +TG K F F++
Sbjct: 217 ASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRV-RLMTFEDTGKCKGFGFVD 275
Query: 517 FASFEASDAAIEAMNNQY 570
F + A+E +N +
Sbjct: 276 FPDIDTCMKAMELGHNSW 293
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 555
VF+ L + + LYD F G + + +++RD +G SK A++ F ++ AAI A
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPV-RDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-A 299
Query: 556 MNNQYLCNRPI 588
++ + L P+
Sbjct: 300 LSGKRLLGLPV 310
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 555
V++GN+ E+ E+ + D F G + V+ DPE+G K + F + + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVI-DPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 556 MNN 564
+NN
Sbjct: 66 LNN 68
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 99 NQDATIYVGGLDDRXTESLLWELFVQSGPVVNVHMPKDRVTQTHQGLWIC 248
N +YVG + E + ++F QSGPV + + D + +G C
Sbjct: 2 NPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFC 51
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.1 bits (77), Expect = 0.012
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +1
Query: 373 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 552
+V++GN+D V + L F++ G + + ++ D TG+ K FA+I F+ A+
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVT-ILCDKFTGHPKGFAYIEFSEPSLVPNAL- 113
Query: 553 AMNNQYLCNRPI 588
+N L RP+
Sbjct: 114 LLNGSMLHERPL 125
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 555
+ + L PE+ E+ + A G + T ++R+ ET S+ FAF F S + S +EA
Sbjct: 73 IILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEA 132
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 33.5 bits (73), Expect = 0.036
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +1
Query: 373 NVFIGNLDPEV--DEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFA-SFEASDA 543
N+F+ NLD + + + L + FS FG I ++ + P T SK + F++F+ FEA
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRI-KSCTLASYPSTEISKGYGFVSFSHPFEAVQ- 477
Query: 544 AIEAMNNQYLCNRPISXSYA 603
AI +N + + +YA
Sbjct: 478 AINTLNGVLFGKKRLFVNYA 497
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 32.7 bits (71), Expect = 0.062
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 342
R YGFV F E++ +A+ M G+P+R++ AS
Sbjct: 224 RKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVAS 260
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.062
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +1
Query: 358 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFE 531
+++ +++G L ++ L FS FG + + + G + FA++NF + E
Sbjct: 1 MELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 31.9 bits (69), Expect = 0.11
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = +1
Query: 247 VEFMGEEDADYAIKVMNMIKLY-GKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 423
+EF ++ A A++ + +L G P+ ++ QK +FI N+DPEV E +
Sbjct: 33 IEFESQDAARNALERQSTQRLISGNPISLDVVPEWQKPSYY--MLFISNIDPEVSENDIK 90
Query: 424 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPI 588
F + I + +V+R + G S + AFI A+ A M + R I
Sbjct: 91 YLFQRYNFI--SARVLRCVD-GTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSI 142
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.5 bits (68), Expect = 0.14
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 555
+++GNL V + TFSA+G + + + K AF+NF S E + +E
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRML-------SHKHSAFLNFDSVETAKHVLEE 641
Query: 556 MNNQ--YLCNRPISXSYA 603
+N + + + P+ S+A
Sbjct: 642 LNGKRIFFGSDPVCISFA 659
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.1 bits (67), Expect = 0.19
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Frame = +1
Query: 337 ASAHQKNLDVGA----NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS--- 495
ASA Q N VF+G L + + F G + + R G
Sbjct: 29 ASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVP 88
Query: 496 KAFAFINFASFEASDAAIEAMNNQYLCNRPI 588
AF+ F + E D AIE +N + L +R I
Sbjct: 89 SGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 481 ETGNSKAFAFINFASFEASDAAIEAMNNQ 567
E + F F++FA+ E AIE MN +
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGK 281
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 114 IYVGGLDDRXTESLLWELFVQSGPVVNVHMPKDRVT 221
I V G+ TE + +LF GPV N+H+ DR T
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 355 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVI 450
N NVFIGNL EK + + F FG I
Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 232 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQ 351
R Y FV+F +DA A+ L G+ +R+ +A ++
Sbjct: 121 RPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNR 160
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 373 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 552
N++IGN D + + L + F FG I + R+ K AF+NF S ++ AI+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI-EYVNFFRE------KNCAFVNFTSLASAINAID 467
Query: 553 AMNNQ 567
+ +
Sbjct: 468 RIKQK 472
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 373 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 552
NVF+GNL + E + + FG I Q K++ + + AF++F + A+ A++
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQI-KIVTE------RNIAFVHFLNIAAAIKAVQ 259
Query: 553 AM 558
+
Sbjct: 260 EL 261
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK-AFAFINFASFEASDAAIE 552
+FIGN+ E+D+ + G + +V + NS +F F F S E A+E
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVA---DADNSMTSFGFAEFESNEQFSRALE 197
Query: 553 AMNN 564
A+N+
Sbjct: 198 ALND 201
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 376 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 519
VF+ N+ P V + L F +FG + + +P TG S I+F
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDL-DLKLNPYTGTSLGLCCISF 142
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 229 IRXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRV 330
+R FV F E+A A+K + LYGKP+ +
Sbjct: 67 MRGQAFVVFDNLENASRALKDLQGYPLYGKPMMI 100
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 349 QKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASF 528
Q N + +VF+ N+ PE + L S FG + + E K A+++F +
Sbjct: 308 QSNELLETSVFVKNIPPETSDVSLKSAMSIFGPV-------KAIEFARRKGTAYVDFVNH 360
Query: 529 EASDAAI 549
E A+
Sbjct: 361 ECVQLAL 367
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 97 LSAIGPAAIFSKDLTTHKLPRSVCFLRSDI 8
+S +GP F L+THK R C S +
Sbjct: 522 MSILGPCLSFLMKLSTHKNERIACLSASQL 551
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 9.4
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 238 YGFVEFMGEEDADYAIKVM--NMI---KLYGKPVRVNKASAHQ-KNLDVGANVFIGNLDP 399
YGFV+F ED A+ N + KL+ + ++ K +Q +N+ G++V N
Sbjct: 399 YGFVQFFTNEDCARALNAEQGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYS 458
Query: 400 EVDEKLLYDTFS 435
E+ L Y T S
Sbjct: 459 EMIGNLPYPTSS 470
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 557 IASIAASEASNDAKLIKAKAFEFPVSGSLITLGVCNITPNAENVSYNNFSSTSGSKFP 384
I ++ E N+ K+ F P+S L+ + I N EN+S N+ S +S P
Sbjct: 375 ICALREWEEDNEKKIY---VFGKPLSSRLLMIHSPPILQNQENISSNDNSKSSPESSP 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,265
Number of Sequences: 5004
Number of extensions: 55626
Number of successful extensions: 236
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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