Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N03
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.064
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.60
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 29 0.79
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.8
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 28 1.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 4.2
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 27 4.2
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 5.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.6
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 7.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.7 bits (71), Expect = 0.064
Identities = 23/80 (28%), Positives = 42/80 (52%)
Frame = -3
Query: 453 TAVASSCALRSFKIFSKLITG*SSAPTEYPSMSAISATVNTDFLTTGPPSPSSPFNILMR 274
+ ++SS +F S +++ +S+P+ S+S S++ ++ F + SPSS +
Sbjct: 562 SGISSSSIPSTFSSVSSILSSSTSSPSS-TSLSISSSSTSSTFSSASTSSPSS-----IS 615
Query: 273 SKYRLKHSALSSPGPSTAHL 214
S + LSSP PST+ L
Sbjct: 616 SSISSSSTILSSPTPSTSSL 635
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.60
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 451 SQIPCWPPSEANRARLPTP-RGFRRPCPAAPDSPGGPXRHAHRCTARGGAPPXXXSPPAT 627
SQ P PP A +P P G+ PA P PG P TA GAP + ++
Sbjct: 520 SQPPMVPPGMALPPGMPAPFPGY----PAVPAMPGIPG-----ATAPPGAPGSYNTSESS 570
Query: 628 GLXIPPG 648
L PPG
Sbjct: 571 NLNAPPG 577
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 490 ARLPTPRGFRRPCPAAPDSPGGPXRHAHRCTARGGAPPXXXSPPATGLXIPP 645
A P+P +RR +A R++ +RG PP P+ G +PP
Sbjct: 873 ASSPSPGAWRRGGASAGGVSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPP 924
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -3
Query: 381 APTEYPSMSAISATVNTDFLTTGPPSPSSPFNILMRSKYRLKHSALSSPGPSTAHLKNVP 202
+P++Y S + +T P +SP +S R KH+A ++P P +A + P
Sbjct: 58 SPSDYKSSAHEQRVNHTTDSMAHVPGNNSPLQTPQKSPPRQKHTAPATPIPVSASRHHKP 117
Query: 201 RAS 193
S
Sbjct: 118 HHS 120
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 432 ALRSFKIFSKLITG*SSAPTEYP--SMSAISATVNTDFLTTGPPSPSS 295
+L SF F T SSA YP SMSA ++V+T T+ S SS
Sbjct: 489 SLTSFGNFLGTATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSS 536
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 144 SVSTKYARSIDCATEQVFVLDSRQSAEASRKAASAYPVW 28
+++ + S D A +Q+F + S Q E K ASA P++
Sbjct: 125 NINKSPSSSEDAAIQQMFQVSSDQWRETQDKMASATPIY 163
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 341 VAEMADMLGYSVGADDHPVMSLEKILKDRNAQEDATAVK 457
+ E+ +LG S+ V S K+LK+ +EDA A+K
Sbjct: 155 IKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAEAIK 193
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 115 RLRHGASFCARLQTICRGVEESC 47
RLR +F A L IC+GV SC
Sbjct: 476 RLRSVCNFVAFLHQICKGVWSSC 498
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Frame = +1
Query: 469 PPSEANRARLPTPRGFRRPC-PAAPDSPGGPXRHAHRCTARGGA---PPXXXSPPATGLX 636
PPS NR + P G P P P + +G + PP S P+TG
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375
Query: 637 IPP 645
PP
Sbjct: 376 PPP 378
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/77 (24%), Positives = 28/77 (36%)
Frame = +1
Query: 535 APDSPGGPXRHAHRCTARGGAPPXXXSPPATGLXIPPGXGXGXXXTNXEXTPGATSWEVA 714
A P P + H+ RG PP SPP L PP + + P ++W+
Sbjct: 207 AEQDPMEPPKFRHKKVPRG--PP---SPPPPVLHSPPRKVSAQEQQDWQIPPSISNWKNP 261
Query: 715 KQFXCSXGRPXXXGGGG 765
K + + G G
Sbjct: 262 KGYTIPLDKRLAADGRG 278
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +1
Query: 472 PSEANRARLPTPRGFRRPCPAAPDSPGGPXRHAHRCTARGGAPPXXXSPP 621
P A+ R+P + P P P +P P A R ++ PP P
Sbjct: 937 PPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTP 986
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +1
Query: 469 PPSEANRARLPTPRGFRRPCPA-APDSPGGPXRHAHRCTARGGAPPXXXSPPA 624
PP +PTP P P AP G P A G PP PPA
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 448 SSQIPCWPPSEANRARLPTPRGFRRPCPAAP 540
SS P ++N + P+P+ RP P+ P
Sbjct: 483 SSSTSTQPTEQSNAQQAPSPKEEERPLPSEP 513
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,563
Number of Sequences: 5004
Number of extensions: 56719
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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