Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_N03
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   1.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   1.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   7.8  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   7.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 288 NILMRSKYRLKHSALSSPG 232
           NI +  KYRL+H    SPG
Sbjct: 130 NIWVPQKYRLRHKGDGSPG 148


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 400 HNRMIVSSHRVPQHVRHFGYSQHGLSDHRATLAFFSFQYPDEI 272
           HN     SH  P  V++FGY    L       + F F +P+++
Sbjct: 314 HNATCYLSHVDPDVVQYFGY----LPQDMVGRSLFDFYHPEDL 352


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 288 NILMRSKYRLKHSALSSPG 232
           NI +  KYRL+H    SPG
Sbjct: 130 NIWVPQKYRLRHKGDGSPG 148


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 400 HNRMIVSSHRVPQHVRHFGYSQHGLSDHRATLAFFSFQYPDEI 272
           HN     SH  P  V++FGY    L       + F F +P+++
Sbjct: 20  HNATCYLSHVDPDVVQYFGY----LPQDMVGRSLFDFYHPEDL 58


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 312 PPSPSSPFNILMRSKYRLKHSALSSPGP 229
           PP P  P+  +     R +H   S+P P
Sbjct: 132 PPRPMGPWISIQEQIPRFRHIGPSTPFP 159


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 312 PPSPSSPFNILMRSKYRLKHSALSSPGP 229
           PP P  P+  +     R +H   S+P P
Sbjct: 133 PPRPMGPWISIQEQIPRFRHIGPSTPFP 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,277
Number of Sequences: 438
Number of extensions: 5412
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)