Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N02
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 42 4e-04
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 42 4e-04
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 42 6e-04
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 42 6e-04
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 42 6e-04
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 42 8e-04
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 41 0.001
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 40 0.003
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 40 0.003
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 40 0.003
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 38 0.007
Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical pr... 37 0.022
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 37 0.022
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 37 0.022
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 36 0.029
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 36 0.029
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 36 0.051
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 36 0.051
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 36 0.051
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 36 0.051
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 36 0.051
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 35 0.089
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 35 0.089
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 35 0.089
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 34 0.15
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 33 0.20
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 33 0.20
AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical ... 33 0.20
Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical pr... 33 0.27
AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic ace... 33 0.27
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 32 0.47
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 31 0.83
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 31 0.83
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 31 0.83
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 31 0.83
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 31 0.83
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 31 0.83
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 31 0.83
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 31 0.83
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 31 1.1
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 31 1.1
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 31 1.1
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 29 4.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 4.4
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 29 5.8
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 29 5.8
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 29 5.8
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 29 5.8
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 29 5.8
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 29 5.8
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLSWXXG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 EWGXXXWLGVXGXAXGRPDVVLXNAVAPXR 407
+G + PD+++ N V R
Sbjct: 130 LFGGITKTWIPLDKIWVPDIIVFNMVKSNR 159
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLSWXXG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 EWGXXXWLGVXGXAXGRPDVVLXNAVAPXR 407
+G + PD+++ N V R
Sbjct: 130 LFGGITKTWIPLDKIWVPDIIVFNMVKSNR 159
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLSWXXG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 EWGXXXWLGVXGXAXGRPDVVLXNAVAPXR 407
+G + PD+++ N V R
Sbjct: 130 LFGGITKTWIPLDKIWVPDIIVFNMVKSNR 159
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLSWXXG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 EWGXXXWLGVXGXAXGRPDVVLXNAVA 398
+G + PD+++ N +A
Sbjct: 130 LFGGITKTWIPLDKIWVPDIIVFNMLA 156
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLSWXXG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 EWGXXXWLGVXGXAXGRPDVVLXNAVA 398
+G + PD+++ N +A
Sbjct: 130 LFGGITKTWIPLDKIWVPDIIVFNMLA 156
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLSWXXG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 EWGXXXWLGVXGXAXGRPDVVLXNAVA 398
+G + PD+++ N +A
Sbjct: 130 LFGGITKTWIPLDKIWVPDIIVFNMLA 156
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 41.5 bits (93), Expect = 8e-04
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Frame = +3
Query: 87 TCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHAX-IRESESTVRI 263
T +A +E +S S + LL +++ SPPD ++ ++ + L H I E +++
Sbjct: 56 TVGVAEFSEQYQGSS-SRLTRHLLEKHNKCSPPDGRVDISHNIELVHIIGINELNQNMQV 114
Query: 264 LXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
L + W D LSW E+ + + PD+++ N +
Sbjct: 115 LVYIVQQWTDASLSWKVEEFRGIKHTWLPEHSIWIPDIIVFNTL 158
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +3
Query: 132 LSLMIDSLLATYDRESPP----DSKIVVNLTLHL-RHAXIRESESTVRILXXLQMNWIDK 296
+S ++++LL Y++ P + V +L R + E + L+M W DK
Sbjct: 29 VSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
Query: 297 RLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+L+W +WG ++ + PD+VL N
Sbjct: 89 KLTWNPTDWGGVEYIHIPSDQIWIPDIVLYN 119
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +3
Query: 141 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLS 305
+ D L+ Y+R + P+ + + L L L + E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
W +G L V PD+VL N
Sbjct: 90 WDPVNYGGVNVLYVPYEMIWVPDIVLYN 117
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +3
Query: 141 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLS 305
+ D L+ Y+R + P+ + + L L L + E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
W +G L V PD+VL N
Sbjct: 90 WDPVNYGGVNVLYVPYEMIWVPDIVLYN 117
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +3
Query: 141 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLS 305
+ D L+ Y+R + P+ + + L L L + E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
W +G L V PD+VL N
Sbjct: 90 WDPVNYGGVNVLYVPYEMIWVPDIVLYN 117
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/96 (20%), Positives = 38/96 (39%)
Frame = +3
Query: 102 SAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHAXIRESESTVRILXXLQM 281
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 282 NWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+W D +SW +WG WL P++V N
Sbjct: 114 SWNDTMVSWDKEQWG-LSWLNFYWIQIWTPNIVQIN 148
>Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical
protein C40C9.2 protein.
Length = 534
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 195 IVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXG-- 365
+VV++ ++L+ + E + ++ ++ W D +L W E+G + + G A
Sbjct: 53 LVVSVKIYLQQILDVDEKNQVITLVAWIEYQWTDYKLKWDPSEYGGIKDIRIPGNANAIW 112
Query: 366 RPDVVLXNA 392
+PDV+L N+
Sbjct: 113 KPDVLLYNS 121
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 36.7 bits (81), Expect = 0.022
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSK----IVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLS 305
+ + L+A Y++ P S+ +VV L L + E + LQ +W+D +L
Sbjct: 30 LFEDLIADYNKLVRPVSENGETLVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLR 89
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
W E+G L V PDVVL N
Sbjct: 90 WDPVEYGGVEVLYVPSDTIWLPDVVLYN 117
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 36.7 bits (81), Expect = 0.022
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSK----IVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLS 305
+ + L+A Y++ P S+ +VV L L + E + LQ +W+D +L
Sbjct: 30 LFEDLIADYNKLVRPVSENGETLVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLR 89
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
W E+G L V PDVVL N
Sbjct: 90 WDPVEYGGVEVLYVPSDTIWLPDVVLYN 117
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 36.3 bits (80), Expect = 0.029
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
L+M W D RL W G WG L V PD++L N
Sbjct: 77 LEMQWFDYRLMWDPGRWGKIRKLHVPVDQIWIPDILLYN 115
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 36.3 bits (80), Expect = 0.029
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 234 IRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+ E + + + L +W+D RLSW E+G + G PD++L N
Sbjct: 45 VHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPGEMLWLPDIILYN 96
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 35.5 bits (78), Expect = 0.051
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Frame = +3
Query: 87 TCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHAX-----IRESES 251
+CAI +A + L D L+ Y+ P + +T+HL+ A + E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 252 TVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
V + L W D L W E+G + +PDV+L N+V
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYGNITDVRFPAGKIWKPDVLLYNSV 115
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 35.5 bits (78), Expect = 0.051
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Frame = +3
Query: 87 TCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHAX-----IRESES 251
+CAI +A + L D L+ Y+ P + +T+HL+ A + E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 252 TVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
V + L W D L W E+G + +PDV+L N+V
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYGNITDVRFPAGKIWKPDVLLYNSV 115
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 35.5 bits (78), Expect = 0.051
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Frame = +3
Query: 87 TCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHAX-----IRESES 251
+CAI +A + L D L+ Y+ P + +T+HL+ A + E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 252 TVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
V + L W D L W E+G + +PDV+L N+V
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYGNITDVRFPAGKIWKPDVLLYNSV 115
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 35.5 bits (78), Expect = 0.051
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Frame = +3
Query: 87 TCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHAX-----IRESES 251
+CAI +A + L D L+ Y+ P + +T+HL+ A + E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 252 TVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
V + L W D L W E+G + +PDV+L N+V
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYGNITDVRFPAGKIWKPDVLLYNSV 115
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 35.5 bits (78), Expect = 0.051
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +3
Query: 141 MIDSLLATYDRESPP--DSK--IVVNLTLHLRHAX-IRESESTVRILXXLQMNWIDKRLS 305
+I+ L++ Y RE P DS +VV+L + L+ + E E + + L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
W + L A PD++L N+V
Sbjct: 85 WEPTAYENVTDLRHPPDALWTPDILLYNSV 114
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 34.7 bits (76), Expect = 0.089
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 234 IRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+ E + V I L++ WID+ L+W ++G + V +PDV++ N
Sbjct: 69 VDERDQIVNIYCWLELYWIDETLTWDPKKFGNLSRIHVPAHKIWKPDVLVYN 120
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 34.7 bits (76), Expect = 0.089
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
L +NW+D RLSW W + + +PD++L N
Sbjct: 165 LNINWMDPRLSWNESLWSEIKAIYIPHARIWKPDIILVN 203
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 34.7 bits (76), Expect = 0.089
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 234 IRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+ E + V I L++ WID+ L+W ++G + V +PDV++ N
Sbjct: 69 VDERDQIVNIYCWLELYWIDETLTWDPKKFGNLSRIHVPAHKIWKPDVLVYN 120
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 165 YDRESPPDSKIVVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEW 323
YD E+P + L +L+ ++E + + ++ + W D RLSW W
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNASAW 115
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/67 (20%), Positives = 31/67 (46%)
Frame = +3
Query: 198 VVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDV 377
+V++ H+ H I + E T+ + + M W D+ L W ++ + V +P +
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKKWQVWQPKI 133
Query: 378 VLXNAVA 398
+ N+ +
Sbjct: 134 KVSNSAS 140
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/67 (20%), Positives = 31/67 (46%)
Frame = +3
Query: 198 VVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDV 377
+V++ H+ H I + E T+ + + M W D+ L W ++ + V +P +
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKKWQVWQPKI 133
Query: 378 VLXNAVA 398
+ N+ +
Sbjct: 134 KVSNSAS 140
>AL110490-4|CAB54450.1| 474|Caenorhabditis elegans Hypothetical
protein Y48B6A.4 protein.
Length = 474
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = +3
Query: 141 MIDSLLATYDRESPP--DSKIVVNLTLHL---RHAXIRESESTVRILXXLQMNWIDKRLS 305
++ L YD P D + VN+ L L + + E + ++ Q W D +L
Sbjct: 28 LLKDLREGYDPVERPVADHRKPVNVKLRLILQQLVDVDERNQVITLVVWNQYTWNDYKLR 87
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
W E+G L + +PD++L N+
Sbjct: 88 WSPEEYGNITTLQIPHGTLWKPDILLFNS 116
>Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical
protein R01E6.4 protein.
Length = 573
Score = 33.1 bits (72), Expect = 0.27
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +3
Query: 135 SLMIDSLLATYDRESPPDSKIVVNLTLHLRHAXIR-----ESESTVRILXXLQMNWIDKR 299
S + + LL Y++ P LT+ + + IR E + L+M W D +
Sbjct: 39 SQLYEDLLFDYNKVPRPVKNSSDILTVDVGASLIRIIDVDEKNQVLTTNLWLEMKWNDAK 98
Query: 300 LSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAVA 398
L+W ++G L + PD+VL N A
Sbjct: 99 LTWTPEKYGGLKTLHIPSDFIWTPDLVLYNNAA 131
>AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-12 protein.
Length = 573
Score = 33.1 bits (72), Expect = 0.27
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +3
Query: 135 SLMIDSLLATYDRESPPDSKIVVNLTLHLRHAXIR-----ESESTVRILXXLQMNWIDKR 299
S + + LL Y++ P LT+ + + IR E + L+M W D +
Sbjct: 39 SQLYEDLLFDYNKVPRPVKNSSDILTVDVGASLIRIIDVDEKNQVLTTNLWLEMKWNDAK 98
Query: 300 LSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAVA 398
L+W ++G L + PD+VL N A
Sbjct: 99 LTWTPEKYGGLKTLHIPSDFIWTPDLVLYNNAA 131
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 32.3 bits (70), Expect = 0.47
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +3
Query: 105 AAECENATSL----SLMIDSLLATYDRESPP--DSKIVVNLTLHLRHAX-IRESESTVRI 263
A CEN +L S +++ + YDR P ++VN+T+ L ++E++
Sbjct: 57 ALNCENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVLGILIELKENQQLAAY 116
Query: 264 LXXLQMNWIDKRLSWXXGEW 323
+ W D RLSW ++
Sbjct: 117 VISHTQRWYDGRLSWDPSKY 136
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 234 IRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+ E ++ L M W D +L+W E+G L V PD+VL N
Sbjct: 100 VDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRVWLPDIVLFN 151
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 31.5 bits (68), Expect = 0.83
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 141 MIDSLLATYDRESPP---DSKIVVNLTLHLRHAXIR---ESESTVRILXXLQMNWIDKRL 302
+I L Y +E P +S N+T+ L I+ E++ + + ++ W D+ L
Sbjct: 27 LIKYLFRDYHKELRPVKDESSGPTNVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFL 86
Query: 303 SWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+W ++G L V +PD+++ N
Sbjct: 87 TWNPSDFGNIKSLHVPSEMIWKPDLLVYN 115
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 31.5 bits (68), Expect = 0.83
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 141 MIDSLLATYDRESPP---DSKIVVNLTLHLRHAXIR---ESESTVRILXXLQMNWIDKRL 302
+I L Y +E P +S N+T+ L I+ E++ + + ++ W D+ L
Sbjct: 27 LIKYLFRDYHKELRPVKDESSGPTNVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFL 86
Query: 303 SWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+W ++G L V +PD+++ N
Sbjct: 87 TWNPSDFGNIKSLHVPSEMIWKPDLLVYN 115
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 234 IRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+ E ++ L M W D +L+W E+G L V PD+VL N
Sbjct: 100 VDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRVWLPDIVLFN 151
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 31.5 bits (68), Expect = 0.83
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 141 MIDSLLATYDRESPP---DSKIVVNLTLHLRHAXIR---ESESTVRILXXLQMNWIDKRL 302
+I L Y +E P +S N+T+ L I+ E++ + + ++ W D+ L
Sbjct: 11 LIKYLFRDYHKELRPVKDESSGPTNVTVQLYFKQIQKVHENDQIITLYCWIEEYWQDEFL 70
Query: 303 SWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+W ++G L V +PD+++ N
Sbjct: 71 TWNPSDFGNIKSLHVPSEMIWKPDLLVYN 99
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 180 PPDSKIVVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXA 359
PP +++ + + + L+ + E E V L W D+RL W E+G + V
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYGGISHIYVPQRM 109
Query: 360 XGRPDVVLXNA 392
P+V + +A
Sbjct: 110 IWLPEVTIADA 120
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 195 IVVNLTLHLRH-AXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRP 371
++V + L L+ + E V + L+ +W+D L W ++G L P
Sbjct: 51 VMVKMGLVLQQIVDVDEKNQVVDVNAWLKFSWVDYSLKWKPEDYGGVTDLRFRKGQLWTP 110
Query: 372 DVVLXNAVAP 401
DV++ N+ P
Sbjct: 111 DVLMYNSADP 120
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 180 PPDSKIVVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWG 326
PP +I + L++ ++ + E E L + +W D RLSW ++G
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYG 126
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
L+M+W D L+W E+G + + +PDV+L N+V
Sbjct: 77 LRMSWTDHYLTWDPSEFGNIKEVRLPINNIWKPDVLLYNSV 117
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Frame = +3
Query: 114 CENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRHAX-IRESESTVRILXXLQ 278
C+ + + + + LL Y+ P + V + L L+ + E V + L
Sbjct: 20 CDGSVAETKLFTDLLKGYNPLERPVQNSSQPLEVKIKLFLQQILDVDEKNQIVSVNAWLS 79
Query: 279 MNWIDKRLSWXXGEWGXXXWLGVXGXA--XGRPDVVLXNAVA 398
W D +L W ++G + G + +PDV+L N+ A
Sbjct: 80 YTWFDHKLQWEPKKYGGIQDIRFPGSSDHIWKPDVLLYNSAA 121
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
L+M+W D L+W E+G + + +PDV+L N+V
Sbjct: 77 LRMSWTDHYLTWDPSEFGNIKEVRLPINNIWKPDVLLYNSV 117
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +3
Query: 144 IDSLLATYDRESP----PDSKIVVNLTL---HLRHAXIRESESTVRILXXLQMNWIDKRL 302
+ + A +D P PD+ N TL +L+ + E E V ++ L W D RL
Sbjct: 50 VSPVYAWFDTSKPLGYDPDAPQRYNYTLFLYNLKLIQVNEPEEQVSVVLELMEYWYDPRL 109
Query: 303 SWXXGEW 323
SW ++
Sbjct: 110 SWNASDY 116
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 117 ENATSLS-LMIDSLLATYDRESPPDSKIVVNLT-LHLRHAXIRESESTVRILXXLQMNWI 290
E+A L+ L I +A+ + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 291 DKRLSWXXGEW 323
D RL W W
Sbjct: 93 DDRLMWNQDTW 103
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 207 LTLHLRHAXIRESESTVRILXXLQMNWIDKRLSW 308
L +L+ ++E E V ++ L W D RLSW
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSW 112
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 797 PPPXXPXXPXXPPAPXXPRXXPXAP 871
PPP P P PP P P P P
Sbjct: 58 PPPMCPPPPPPPPPPMCPPPPPPMP 82
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +3
Query: 174 ESPPDSKIVVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXG 353
E P KI + L L + + E E + L M W D +L W ++ + V
Sbjct: 61 ELPMIVKIGMQLVLLIN---VDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAP 117
Query: 354 XAXGRPDVVLXN 389
PD+VL N
Sbjct: 118 EKVWLPDIVLFN 129
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +3
Query: 174 ESPPDSKIVVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXG 353
E P KI + L L + + E E + L M W D +L W ++ + V
Sbjct: 61 ELPMIVKIGMQLVLLIN---VDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAP 117
Query: 354 XAXGRPDVVLXN 389
PD+VL N
Sbjct: 118 EKVWLPDIVLFN 129
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +3
Query: 174 ESPPDSKIVVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXG 353
E P KI + L L + + E E + L M W D +L W ++ + V
Sbjct: 61 ELPMIVKIGMQLVLLIN---VDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAP 117
Query: 354 XAXGRPDVVLXN 389
PD+VL N
Sbjct: 118 EKVWLPDIVLFN 129
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/54 (24%), Positives = 21/54 (38%)
Frame = +3
Query: 234 IRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
+ E ++IL +W D L+W EW + + PD + N V
Sbjct: 75 VNEQNEQIKILLWFPQSWKDDYLTWDPKEWNGIERIIIPKSQIWIPDGYIFNTV 128
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/54 (24%), Positives = 21/54 (38%)
Frame = +3
Query: 234 IRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAV 395
+ E ++IL +W D L+W EW + + PD + N V
Sbjct: 75 VNEQNEQIKILLWFPQSWKDDYLTWDPKEWNGIERIIIPKSQIWIPDGYIFNTV 128
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/68 (26%), Positives = 23/68 (33%)
Frame = -3
Query: 485 GXHXSLSEGAGSRDSXXXGGXXGXXPAXGGDRVXQHHVXPPTSXSXXTQPXGXAPFPXXP 306
G ++ GA G G P GG + P + P G AP P P
Sbjct: 230 GAPMAMGSGAAPLGQLPGSGLPGGLPRGGGPPL-------PGAAQGIVAPGGGAPVPHAP 282
Query: 305 TQSFVDPI 282
F+ PI
Sbjct: 283 ANKFLQPI 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,347
Number of Sequences: 27780
Number of extensions: 213482
Number of successful extensions: 1170
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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