Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N02
(883 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 36 7e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.005
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 33 0.005
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 32 0.008
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.011
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.011
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.011
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.011
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.011
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.011
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.011
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.011
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 30 0.025
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 29 0.075
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 28 0.099
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 28 0.13
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 2.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 4.9
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 37.9 bits (84), Expect = 1e-04
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Frame = +3
Query: 96 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHAX-IRESESTVR 260
I SA C + D LL+ Y+R P S +VV L L L + + +
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 261 ILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
L+ W D + W E+G L V PD+VL N
Sbjct: 69 TNVWLEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.7 bits (81), Expect = 3e-04
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Frame = +3
Query: 114 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHAXIRESESTVRILXXLQ 278
C++ TS S + L YDR+ P+ K ++ L ++H + E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 279 MNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNAVA 398
+ W L+W E+ + V PD+V+ + +
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTS 127
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 35.5 bits (78), Expect = 7e-04
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Frame = +3
Query: 114 CENATSLSLMIDSLLATYDRESPPDSKIVVNLT--LHLRHAXIRESESTVRILXX---LQ 278
C + D LL+ Y++ P + LT + L+ + + + +I+ ++
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVE 78
Query: 279 MNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+W D +L W E+G L V RPD+VL N
Sbjct: 79 QSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 0.001
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +3
Query: 141 MIDSLLATYDRESPP--DSKIVVNLTLHLRHAXIRESESTVRILXX---LQMNWIDKRLS 305
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
W E+G L V RPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 0.001
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +3
Query: 141 MIDSLLATYDRESPP--DSKIVVNLTLHLRHAXIRESESTVRILXX---LQMNWIDKRLS 305
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
W E+G L V RPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.005
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRH-AXIRESESTVRILXXLQMNW 287
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 288 IDKRLSWXXGE 320
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 32.7 bits (71), Expect = 0.005
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Frame = +3
Query: 87 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRHAX-IRESES 251
+C +A + + D LL+ Y+R P ++ V + L L +
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 252 TVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
+ ++ W D +L W ++G L V PD+VL N
Sbjct: 66 IMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 31.9 bits (69), Expect = 0.008
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLT--LHLRHAXIRESESTVRILXX---LQMNWIDKRLS 305
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 306 WXXGEWGXXXWLGVXGXAXGRPDVVLXN 389
W E+G L V PD+VL N
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 31.5 bits (68), Expect = 0.011
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
L++ W+D L W E+G L + +PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 31.5 bits (68), Expect = 0.011
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
L++ W+D L W E+G L + +PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 31.5 bits (68), Expect = 0.011
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
L++ W+D L W E+G L + +PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 31.5 bits (68), Expect = 0.011
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
L++ W+D L W E+G L + +PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 31.5 bits (68), Expect = 0.011
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
L++ W+D L W E+G L + +PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 31.5 bits (68), Expect = 0.011
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
L++ W+D L W E+G L + +PD+++ N+
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.5 bits (68), Expect = 0.011
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
L++ W+D L W E+G L + +PD+++ N+
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 146
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.5 bits (68), Expect = 0.011
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 273 LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
L++ W+D L W E+G L + +PD+++ N+
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 146
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 30.3 bits (65), Expect = 0.025
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 192 KIVVNLTL-HLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGR 368
K+ VN L ++ + E ++ L+ W D +L W ++G L + +
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 369 PDVVLXN 389
PD+VL N
Sbjct: 111 PDIVLFN 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 28.7 bits (61), Expect = 0.075
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Frame = +3
Query: 93 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHAXIRESESTVR 260
A+A++ + +++ LL TY+ E P ++ +V++ L L + ++ +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 261 ILXX-LQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
I L++ W D + W ++G L + +PDV++ N+
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNS 115
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 28.3 bits (60), Expect = 0.099
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +3
Query: 117 ENATSLSLMIDSLLATYDRESPPDS--KIVVNLTLHLRHAXIRESE--STVRILXXLQMN 284
++ T+L + L YD P S +I N+T+ L + + S + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 285 WIDKRLSWXXGEWGXXXWLGVXGXAXGRPDVVLXNA 392
W D LSW ++ ++ V PD+ + N+
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNS 134
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/69 (24%), Positives = 25/69 (36%)
Frame = +3
Query: 195 IVVNLTLHLRHAXIRESESTVRILXXLQMNWIDKRLSWXXGEWGXXXWLGVXGXAXGRPD 374
+V L+LH + E + + W D L W E+ + V RPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 375 VVLXNAVAP 401
+L N P
Sbjct: 92 TILYNNADP 100
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 2.1
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHAXIRESESTVRILXXLQMNW 287
N ++S ++DS +YD+ P+ + V +T++ L + + E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 288 IDKRLSW 308
D RL++
Sbjct: 68 TDPRLAF 74
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 4.9
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHAXIRESESTVRILXXLQMNW 287
N ++S ++DS +YD+ P+ + V +T++ L + + E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 288 IDKRLSW 308
D RL++
Sbjct: 68 TDPRLAF 74
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,242
Number of Sequences: 438
Number of extensions: 2921
Number of successful extensions: 27
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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