Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N01
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 32 0.083
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.3
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 28 1.3
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 26 7.2
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 7.2
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 7.2
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 9.5
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 25 9.5
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 32.3 bits (70), Expect = 0.083
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -1
Query: 502 KVVVGPSSXDSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 323
++ V S ++A SH CF QN+ + + + +P T F+ LLK AFF
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289
Query: 322 LTGR 311
L GR
Sbjct: 290 LFGR 293
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -3
Query: 284 NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 174
++S N++R+G L +G ++VC GD + LSC G+
Sbjct: 885 DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 361 SSMLPAKRVLTSSVSKSCGICPSRSAQGRSXRGASLPN 474
S +P+K L SV+ S I P R A+ S S PN
Sbjct: 140 SPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPN 177
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +1
Query: 304 PPIVQSTSK-RKQFSIKSRR-SSMLPAKRVLTSSVSKSCGICPSRSAQGRSXRGASLPNX 477
PP+ Q+ S ++F K S LP VS++ G S QG + +
Sbjct: 276 PPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEKVSENLGSETRESLQGAKPAAGAHSSD 335
Query: 478 LKTGRPRPSFGNSPSST 528
+ +PS+ PSS+
Sbjct: 336 NALEQIKPSYSADPSSS 352
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 4.1
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -3
Query: 455 RXLLPCAEREGHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYS 276
R LL C +R P +L DV ++DD + F+ T GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163
Query: 275 YLHNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQVA 108
+ H+S V+ E + L DR K++ P N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.4
Identities = 23/81 (28%), Positives = 33/81 (40%)
Frame = +1
Query: 286 SIPSRCPPIVQSTSKRKQFSIKSRRSSMLPAKRVLTSSVSKSCGICPSRSAQGRSXRGAS 465
SIP+ STS I S SSML + +++S S P S+ S +S
Sbjct: 21 SIPASSSSAAASTSLSSSSVIPSSSSSMLSSSS--ATAISSSSSSSPLSSSSFTSPASSS 78
Query: 466 LPNXLKTGRPRPSFGNSPSST 528
L + + S +S S T
Sbjct: 79 FITSLVSSSSQQSSSSSASLT 99
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 7.2
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = +3
Query: 261 RIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCT 440
R ++G++Q +A D+ N Q + K+++ A + G N+I E++N P+ T
Sbjct: 42 RAFRIGLVQ--LANTKDKSENLQLARL-----KVLEAA-KNGSNVIVLPEIFNSPYG--T 91
Query: 441 REKXPWCEFAESXEDGPTTTFLRELAIKYAMVIV-SSILER-DXKHSDILWNTAVVIXDX 614
+ E E E P+ L +A + SI ER D K L+NTA+V
Sbjct: 92 GYFNQYAEPIE--ESSPSYQALSSMAKDTKTYLFGGSIPERKDGK----LYNTAMVFDPS 145
Query: 615 GNVI 626
G +I
Sbjct: 146 GKLI 149
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 93 NNLTGRDLEEFNRIHFGRRNNLEI 164
NN+ R +EE N I G+R LE+
Sbjct: 8 NNILKRHIEEDNNIDNGKRKKLEL 31
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 63 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 173
E H +E +I + N+T DL F + FG+ N ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 422 HIPQLLETDDVNTLLAGNIDDLLDFIENC 336
++P+LLE D+N L G + + LD + NC
Sbjct: 222 NLPKLLERPDINDLHQGILQE-LDSLCNC 249
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 403 SKSCGICPSRSAQGRSXRGASLPNXLKTGRPRPSFGNSPSSTQW*SCP 546
S SC CP+ + + RS + + K+ P PS + PSST+ + P
Sbjct: 82 SASCTGCPALNNRIRSLNASKSQSGRKSLSPNPS--SVPSSTETKASP 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,553
Number of Sequences: 5004
Number of extensions: 51624
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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