Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_N01
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 170 1e-42
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 35 0.065
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 34 0.11
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.3
06_03_1248 + 28685911-28687719 29 5.7
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 5.7
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 170 bits (413), Expect = 1e-42
Identities = 95/194 (48%), Positives = 120/194 (61%), Gaps = 8/194 (4%)
Frame = +3
Query: 72 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 242
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 243 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 407
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 408 ELWNMPFAFCTREKXPWCEFAESXEDGPTTTFLRELAIKYAMVIVSSILERDXKHSDILW 587
E W MPFAFCTREK WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 588 NTAVVIXDXGNVIG 629
NTAVVI + GN+IG
Sbjct: 206 NTAVVIGNHGNIIG 219
Score = 69.3 bits (162), Expect = 3e-12
Identities = 30/55 (54%), Positives = 31/55 (56%)
Frame = +1
Query: 628 GKHXXNHIPXVGDFNESXYYXEGXXGHPVFXTXXGXXXXXXCFGXXXXLNWXMXG 792
G H NHIP VGDFNES YY EG GHPVF T G C+G LNW G
Sbjct: 219 GIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFG 273
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 35.1 bits (77), Expect = 0.065
Identities = 23/92 (25%), Positives = 48/92 (52%)
Frame = +3
Query: 354 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKXPWCEFAESXEDGPTTTFLRELAIKYAM 533
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 534 VIVSSILERDXKHSDILWNTAVVIXDXGNVIG 629
VI S E + ++ +N+ +I G +G
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLG 119
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 34.3 bits (75), Expect = 0.11
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +3
Query: 396 ICFQELWNMPFAFCTREKXPWCEFAESXEDG--PTTTFLRELAIKYAMVIV-SSILERDX 566
+ FQE+WN P++ E P E + G P+ + L E+A + + IV SI ER
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIPERS- 69
Query: 567 KHSDILWNTAVVIXDXGNVIGK 632
S L+NT VI G + K
Sbjct: 70 --SGRLFNTCCVIGPDGQIKAK 89
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 460 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 329
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>06_03_1248 + 28685911-28687719
Length = 602
Score = 28.7 bits (61), Expect = 5.7
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 175 NPRSLQLRRLTSTSPHTLSRPRTSRPDRREL*R*E*FSIPSRCPPIVQSTSKRKQFSIKS 354
+PRS R STS S PR+S RR + S P+ S+ S
Sbjct: 6 SPRSRDSARPKSTSGRPPSSPRSSDTTRRS----SFTAASSSDKPVPSFLRPTVSSSLHS 61
Query: 355 RRSSMLPAKRVLTSS-VSKSCGICPSRSA 438
SS + +L+SS SK G P RSA
Sbjct: 62 SSSSSPSSSSLLSSSPSSKGTGTTPRRSA 90
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 487 PSSXDSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSW 377
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,608,746
Number of Sequences: 37544
Number of extensions: 362413
Number of successful extensions: 1008
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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