Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M24
(840 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 24 2.0
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 24 2.0
DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein ... 23 4.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.6
AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein ... 23 4.6
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 6.1
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 454 LVRASSELTR*TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKH 275
++ ++E+T V+ +++ NET T + S+ R+R R T CH ++
Sbjct: 179 ILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRT----SSCHSRY 234
Score = 22.2 bits (45), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 413 RTESCRSRTKRNRHD 369
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 454 LVRASSELTR*TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKH 275
++ ++E+T V+ +++ NET T + S+ R+R R T CH ++
Sbjct: 179 ILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRT----SSCHSRY 234
Score = 22.2 bits (45), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 413 RTESCRSRTKRNRHD 369
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 454 LVRASSELTR*TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKH 275
++ ++E+T V+ +++ NET T + S+ R+R R T CH ++
Sbjct: 179 ILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRT----SSCHSRY 234
Score = 22.2 bits (45), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 413 RTESCRSRTKRNRHD 369
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 454 LVRASSELTR*TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKH 275
++ ++E+T V+ +++ NET T + S+ R+R R T CH ++
Sbjct: 179 ILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRT----SSCHSRY 234
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 454 LVRASSELTR*TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKH 275
++ ++E+T V+ +++ NET T + S+ R+R R T CH ++
Sbjct: 179 ILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRT----SSCHSRY 234
Score = 22.2 bits (45), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 413 RTESCRSRTKRNRHD 369
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 454 LVRASSELTR*TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKH 275
++ ++E+T V+ +++ NET T + S+ R+R R T CH ++
Sbjct: 179 ILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRT----SSCHSRY 234
Score = 22.2 bits (45), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 413 RTESCRSRTKRNRHD 369
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 454 LVRASSELTR*TAVVQNRADRARNETDTTLRLGRSAEGRRTRVRIQSET*DDFRECHIKH 275
++ ++E+T V+ +++ NET T + S+ R+R R T CH ++
Sbjct: 179 ILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRT----SSCHSRY 234
Score = 22.2 bits (45), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 413 RTESCRSRTKRNRHD 369
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein 1
protein.
Length = 116
Score = 22.6 bits (46), Expect = 4.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 651 LTRSMSYYTTNPXGRWNH 704
L + ++TTN +WNH
Sbjct: 86 LDKLAEWFTTNEPEKWNH 103
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 177 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 275
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 177 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 275
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein
protein.
Length = 116
Score = 22.6 bits (46), Expect = 4.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 651 LTRSMSYYTTNPXGRWNH 704
L + ++TTN +WNH
Sbjct: 86 LDKLAEWFTTNEPEKWNH 103
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 6.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 413 RTESCRSRTKRNRHD 369
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,232
Number of Sequences: 438
Number of extensions: 4948
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -