Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M22
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 31 1.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.2
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
03_06_0471 + 34169562-34169892,34170121-34170347 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 30 2.8
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438... 29 3.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.8
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 6.4
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 6.4
03_01_0515 - 3864796-3865425 28 8.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.4
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 311 HQPSAAAPFPCVPTQLFVDPIHLKICQYQHGGLGLTNVSMSQM-QGQVDYDFGVRG 147
H P AAA P VP++L P L + GG GL S S + G + D G+ G
Sbjct: 7 HSPRAAAAAPSVPSRL-PRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = +1
Query: 637 GGXPPLAMFPNGXPRKXPPGXXRWXGRXPGSPXXPXXXXPPXXPXPPXXXPPXXXG 804
GG PP P PP R G G P P PP P P PP G
Sbjct: 1171 GGTPPPNAHGGVAPPPPPP---RGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGG 1223
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 364 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 516
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +1
Query: 610 GAXTXXRGEGGXPPLAMFPNGXPRKXPPGXXRWXGRXPGSPXXPXXXXPPXXPXPPXXXP 789
GA +G P P G P PPG G PG+ P P PP P
Sbjct: 27 GAYPLMQGYPNSPGQYPTPGGYP-SAPPGQYPPAGGYPGAQYPPSGYPPSQGGYPPGAYP 85
Query: 790 P 792
P
Sbjct: 86 P 86
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 209 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 325
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/66 (30%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Frame = +1
Query: 604 PLGAXTXXRGEGGXP--PLAMFPNGXPRKXPPGXXRWX-GRXPGSPXXPXXXXPPXXPXP 774
P T G GG P P P P+ PP G P P P P P P
Sbjct: 251 PAAPGTLPNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPP 310
Query: 775 PXXXPP 792
P P
Sbjct: 311 PLANGP 316
>06_01_0606 -
4382133-4382704,4383017-4383336,4384152-4384258,
4384339-4384512,4384956-4385204,4386831-4386986
Length = 525
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 41 RFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPVLQNRSQPD 178
++LL A A + SL +DSL +++PPV Q + +P+
Sbjct: 413 QYLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 634 EGGXPPLAMFPNGXPRKXPPGXXRWXGRXPGSPXXPXXXXPPXXPXPPXXXPP 792
+GG PP P P PP G P P P P PP PP
Sbjct: 15 QGGFPPQP--PPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPP 65
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +1
Query: 610 GAXTXXRGEGGXPPLAMFPNGXPRKXPPGXXRWXGRXPGSPXXPXXXXPPXXPXPPXXXP 789
GA GE PP P P PP P +P PP P PP P
Sbjct: 8 GAELLSPGEAEWPPELRLPPPPPPHPPPPPPLEPA-PPSTPQLRGEASPPPPPPPPVGPP 66
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Frame = +1
Query: 646 PPLAMF---PN-GXPRKXPPGXXRWXGRXPGSPXXPXXXXPPXXPXPPXXXPP 792
PP AM+ P P PP R P + P PP P PP PP
Sbjct: 52 PPQAMYQAHPQYPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPPPSSPP 104
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 634 EGGXPPLAMFPNGXPRKXPPGXXRWXGRXPGSPXXPXXXXPPXXPXPPXXXPP 792
E PPLA P+ PP P P PP P PP PP
Sbjct: 45 EASPPPLAPPPSVTSSPPPPAAGPLM--PPPPPPPSVTSSPPPPPLPPPPPPP 95
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,254,810
Number of Sequences: 37544
Number of extensions: 568211
Number of successful extensions: 1922
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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