Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M19
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 229 2e-60
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 226 1e-59
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.7
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.7
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 7.6
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.6
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.6
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.6
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 10.0
05_04_0123 + 18210069-18213737 28 10.0
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 10.0
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 10.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 229 bits (560), Expect = 2e-60
Identities = 107/176 (60%), Positives = 130/176 (73%)
Frame = +3
Query: 57 IGATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 236
+ A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 237 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 416
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 417 REPRLLIVLDPAQDHQPITEASYVNXPVIALCNTDSPLXFVDIAIPCNTKSSHSIG 584
EPRLLI+ DP DHQPI E++ N P IA C+TDSP+ +VDI IP N K +SIG
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIG 176
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 226 bits (553), Expect = 1e-59
Identities = 104/165 (63%), Positives = 125/165 (75%)
Frame = +3
Query: 90 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 269
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 270 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 449
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 450 AQDHQPITEASYVNXPVIALCNTDSPLXFVDIAIPCNTKSSHSIG 584
DHQPI E++ N P IA C+TDSP+ +VDI IP N K SIG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIG 176
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 157 TFSAPRWVVAASILVTSSSLRASTSNP 77
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 335 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 442
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 3 LEVHFASQWHYTRLVVTQIGATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 179
L V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 238 LGVPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 339 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 184
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 164 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 271
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 110 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 289
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 290 VRHLITALRSACCTEVCR 343
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -2
Query: 571 EDLVLHGIAMSTNXSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRNAAWIWLV 392
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 391 K 389
K
Sbjct: 64 K 64
>05_04_0123 + 18210069-18213737
Length = 1222
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 51 TQIGATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVI 215
T +G+ G V+ V ++ + + L EN+N + V+ RRA GT V+
Sbjct: 289 TLLGSCGMGSAVVVTTRNVKVASIMESISPLCLENLNPEDSWIVFSRRAFGTGVV 343
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 167 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 346
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 347 HRC 355
RC
Sbjct: 211 GRC 213
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 200 WYPCDQLASYLGKTCSGCSCCRSHREP 280
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,244,875
Number of Sequences: 37544
Number of extensions: 482738
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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