Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M15
(950 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 37 0.004
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.005
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.006
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.008
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.026
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.059
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.18
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.31
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 1.3
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 28 1.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.8
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p... 26 6.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.8
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 6.8
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 37.1 bits (82), Expect = 0.004
Identities = 27/71 (38%), Positives = 27/71 (38%)
Frame = -3
Query: 825 AXAPGXXXGWXGGXGGPXAAAGXXXRXGGGRGLXXXXGXRGGGRXGIXFXGGGGXAXXPT 646
A PG G G GG G GGGRG G RGGGR G GG G
Sbjct: 2 AYTPGSRGGRGGSRGGRGGFNGGRGGFGGGRG-----GARGGGRGGA--RGGRGGRGGAR 54
Query: 645 XGPPXXPGGGG 613
G GG G
Sbjct: 55 GGRGGSSGGRG 65
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = -3
Query: 813 GXXXGWXGGXGGPXAAAGXXXRXG-GGRGLXXXXGXRGGGRXGIXFXGGG 667
G G+ GG GG R G GGRG G RGG G GG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRG--GARGGRGGSSGGRGGAKGG 70
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.7 bits (81), Expect = 0.005
Identities = 27/104 (25%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXPPPPXKXI--PXRPPPRXPXXXXSPRPP---PXRXXXPAAAXG 778
PPPP P G P + + P PPP P PP R P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 779 PPXPPXHPXXXPGAXAXRXP-XXXGXXPXXXXAXXXPPTXSEXP 907
P PP P P + P P A PP + P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 36.3 bits (80), Expect = 0.006
Identities = 31/111 (27%), Positives = 33/111 (29%), Gaps = 2/111 (1%)
Frame = +1
Query: 511 KXRPPPXXKP--XGXXXPPXSXGXXTXGRXKXXPKXPPSTGXXGGPXGGXAGXPPXTXKX 684
K RPPP P PP G P PP P AG P +
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNG---SSNSSLPPPPPP-------PRSNAAGSIPLPPQG 357
Query: 685 NSXPPXPPAPXXSXQSAPPPXPXXPTGXXXGTPXXPAPPXXXXGRXSXXXP 837
S PP PP PP P PAPP GR + P
Sbjct: 358 RSAPPPPPPRSAPSTGRQPP----PLSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 35.9 bits (79), Expect = 0.008
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGP---P 784
PP P P + PP +P P P +P PP PAA P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 785 XPPXHPXXXPGA 820
PP P P A
Sbjct: 475 APPPAPAPAPAA 486
Score = 33.5 bits (73), Expect = 0.045
Identities = 23/82 (28%), Positives = 27/82 (32%)
Frame = +1
Query: 556 PPXSXGXXTXGRXKXXPKXPPSTGXXGGPXGGXAGXPPXTXKXNSXPPXPPAPXXSXQSA 735
PP S + PP P G P + + S PP PP P +SA
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP-PAIPGRSA 400
Query: 736 PPPXPXXPTGXXXGTPXXPAPP 801
P P TP P PP
Sbjct: 401 -PALPPLGNASRTSTPPVPTPP 421
Score = 32.7 bits (71), Expect = 0.078
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Frame = +2
Query: 617 PPPGXXGG-----PXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGP 781
PPP G P +G + P P PP P PP PAA P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Query: 782 PXPPXHPXXXPGAXA 826
P P P G A
Sbjct: 451 PSAPIAPPLPAGMPA 465
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 665 PPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPPXHP 802
PP P RPP R P +P PPP PP P P
Sbjct: 230 PPIPPSIPSSRPPERVPSLS-APAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 27.5 bits (58), Expect = 2.9
Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Frame = +2
Query: 617 PPPGXXGGPXVGXXAXPP--PPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXG---- 778
P P P G + PP PP P P P PPP AA
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310
Query: 779 PPXPP 793
PP PP
Sbjct: 311 PPPPP 315
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +2
Query: 665 PPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPP 793
PPPP PP S PPP AA P PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +1
Query: 613 PPSTGXXGGPXGGXAGXPPXTXKXNSXPPXPPAPXXS--XQSAPPPXPXXP 759
P ST P + PP S P PP P S S+PP P P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/66 (30%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +1
Query: 604 PKXPPSTGXXGGPXGGXAGXPPXTXKXNSXPPXPPAPXXSXQSAPPPXPXXPTGXXXGTP 783
P PP P PP PP PP P + PPP P P G+
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 784 -XXPAP 798
PAP
Sbjct: 792 YYAPAP 797
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +2
Query: 665 PPPPXKXIPXRPPPRXPXXXXSP---RPPPXRXXXPAAAXGPPXPPXHP 802
PPPP +P P P +P PPP A GPP PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.9 bits (74), Expect = 0.034
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +1
Query: 694 PPXPPAPXXSXQSAPPPXPXXPTGXXXGTPXXPAPPXXXXGRXSXXXP 837
PP PP AP P P P G P P PP G P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPP 793
PPP GGP PPPP + PP P PPP + P P
Sbjct: 752 PPPAPIMGGPP------PPPPPPGVAGAGPP-------PPPPPPPAVSAGGSRYYAPAPQ 798
Query: 794 XHP 802
P
Sbjct: 799 AEP 801
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Frame = +2
Query: 695 RPPPRXPXXXXSPRPPPXRXXXPAAA---XGPPXPPXHP 802
+ PP P P P P P A GPP PP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.9 bits (79), Expect = 0.008
Identities = 27/98 (27%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPA---AAXGPP 784
PP P G P V + PP PP P P P P P AA PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 785 XPPXH---PXXXPGAXAXRXPXXXGXXPXXXXAXXXPP 889
PP P P P P + PP
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 33.9 bits (74), Expect = 0.034
Identities = 25/94 (26%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXX--AXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPX 787
PP P G P V A PP P + P P P+P P + PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 788 PPXHPXXXPGAXAXRXPXXXGXXPXXXXAXXXPP 889
P P A P G P + PP
Sbjct: 1143 P------KPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 31.1 bits (67), Expect = 0.24
Identities = 29/113 (25%), Positives = 32/113 (28%), Gaps = 8/113 (7%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPP---XRXXXPAAAXGPP 784
PP P G P V + PP PP P P P P P+ A P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 785 XPPXH---PXXXPGAXAXRXPXXXGXXPXXXXAXXXPPT--XSEXPXXXXPXA 928
P P P A P P + PP S P P A
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224
Score = 29.9 bits (64), Expect = 0.55
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 688 SXPPXPPAPXXSXQSAPPPXPXXPTGXXXGTPXXPAP 798
S PP PAP S P P P G P P P
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097
Score = 29.9 bits (64), Expect = 0.55
Identities = 27/105 (25%), Positives = 30/105 (28%), Gaps = 3/105 (2%)
Frame = +2
Query: 617 PPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPPX 796
P P P PP P + P P P+P PA + PP P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP-- 1162
Query: 797 HPXXXPGAXAXRXP-XXXGXXPXXXXAXXXPPT--XSEXPXXXXP 922
P A P G P A PP SE P P
Sbjct: 1163 ----KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 29.5 bits (63), Expect = 0.73
Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +2
Query: 614 PPPPGXXGG-PXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXX-PAAAXG-PP 784
PP P G P V A PP PP P P PPP P + G PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Query: 785 XP 790
P
Sbjct: 1229 VP 1230
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +1
Query: 664 PPXTXKXNSXPPXP---PAPXXSXQSAPPPXPXXPTGXXXGTPXXPAP 798
PP PP P AP ++ PP P +G P PAP
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
Score = 28.3 bits (60), Expect = 1.7
Identities = 23/97 (23%), Positives = 27/97 (27%), Gaps = 4/97 (4%)
Frame = +1
Query: 523 PPXXKPXGXXXPPXSXGXXTXGRXKXXPKXPPSTGXXGGPXGGXAGXPPXTXKXNSXPPX 702
P P G P G + P P +G PP + PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 703 P-PA---PXXSXQSAPPPXPXXPTGXXXGTPXXPAPP 801
P P+ P A PP P P APP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +1
Query: 604 PKXPPSTGXXGGPXGGXAGXPPXTXKXNSXPPXPPAPXXSXQSAPPPXPXXPTGXXXGTP 783
P P S P A PP K +S P P P P P P TP
Sbjct: 992 PSAPLSKPVSTSPAAPLARVPP-VPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTP 1050
Query: 784 XXP 792
P
Sbjct: 1051 PVP 1053
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/59 (27%), Positives = 17/59 (28%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXP 790
PP P P V + PP PP P P P P P A P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.3 bits (75), Expect = 0.026
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +2
Query: 665 PPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPPXHPXXXP 814
P P P RP P +P PPP P PP P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 29.1 bits (62), Expect = 0.96
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPP 745
P P P + PPPP P P P S PPP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +2
Query: 671 PPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPP 793
PP P PPP S PPP PA P PP
Sbjct: 1699 PPQMSAPTPPPP-----PMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = +1
Query: 667 PXTXKXNSXPPX--PPAPXXSXQSAPPPXPXXPTGXXXGTPXXPAPPXXXXGRXSXXXP 837
P ++ PP P P S PPP P G P P PP S P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPM--PAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +1
Query: 694 PPXPPAPXXSXQSAPPPXPXXPTGXXXGTPXXPAPPXXXXGRXS 825
PP PP SAPP P+ P AP G S
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.059
Identities = 28/73 (38%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = -3
Query: 816 PGXXXGWXGGXGGPXAAAGXXXRXGGGRG-LXXXXGXRGGGRXGIXFXGGGGXAXXPTXG 640
PG G+ GG GG G GGG G G GGG G F GG G G
Sbjct: 204 PGGFGGF-GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG--FGGGLGGFGGGPGG 260
Query: 639 PPXXPGG-GGXLW 604
PGG GG W
Sbjct: 261 FGGGPGGHGGPGW 273
Score = 32.7 bits (71), Expect = 0.078
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = -3
Query: 813 GXXXGWXGGXGGPXAAAGXXXRXGGGRGLXXXXGXRGGGRXGIXFXGGGGXAXXPTXGPP 634
G G+ GG GGP G GG G G GG F GG G G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG------FGGGPGGFEGGPGGFG 241
Query: 633 XXPGG-GGXL 607
PGG GG L
Sbjct: 242 GGPGGFGGGL 251
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.18
Identities = 23/88 (26%), Positives = 25/88 (28%)
Frame = +2
Query: 665 PPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPPXHPXXXPGAXAXRXPXX 844
P PP RPP P P PP P + PP P P A + P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186
Query: 845 XGXXPXXXXAXXXPPTXSEXPXXXXPXA 928
P PP P P A
Sbjct: 187 APSLP--SAVPPMPPKVPPPPLSQAPVA 212
Score = 30.7 bits (66), Expect = 0.31
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +1
Query: 640 PXGGXAGXPPXTXKXNSXPPX--PPAPXXSXQSAPPPXPXXPTGXXXGTPXXPAPP 801
P A PP K P PPA + +PP P P+ P P PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 29.9 bits (64), Expect = 0.55
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Frame = +2
Query: 617 PPPGXXGGPXVGXXAXP-----PPPXK-XIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXG 778
PPP P + A P PPP + P + PP P + P P + P +
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQA 209
Query: 779 P 781
P
Sbjct: 210 P 210
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = -3
Query: 813 GXXXGWXGGXGGPXAAAGXXXRXGGGRGLXXXXGX--RGGGRXGIXFXGGGG 664
G G+ GG GG G R G G G G RGG R G GG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = +2
Query: 659 AXPPPPXKXIPXR-PPPRXPXXXXSPRPPPXRXXXPAAAXGPPXP 790
A PPPP +P PP P P PP + G P P
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXP 667
PPPPG GGP G P
Sbjct: 76 PPPPGAEGGPGAGFGGFP 93
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.9 bits (59), Expect = 2.2
Identities = 28/110 (25%), Positives = 31/110 (28%), Gaps = 2/110 (1%)
Frame = +2
Query: 476 GXXLPPXPXFFKXXXPXPXKNPXXXXDPXLLXGXXXXGXXXRXQRXPPPPGXXGGPXVGX 655
G +PP P K P P +P PPP G +
Sbjct: 204 GEHMPPPPMHHKPGEHMPP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM-- 259
Query: 656 XAXPPPPXKXIPXR--PPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPPXH 799
PPPP P PPP PPP P P PP H
Sbjct: 260 ---PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM--PPPPMH 304
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Frame = +2
Query: 665 PPPPXKXIPXR--PPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPPXH 799
PPPP P PPP PPP P P PP H
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM--PPPPMH 317
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Frame = +2
Query: 665 PPPPXKXIPXR--PPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPPXH 799
PPPP P PPP PPP P P PP H
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM--PPPPMH 330
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Frame = +2
Query: 665 PPPPXKXIPXR--PPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPPXH 799
PPPP P PPP PPP P PP H
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHH 345
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 694 PPXPPAPXXSXQSAPPPXP 750
PP PP P S PPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.9
Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = +1
Query: 613 PPST-GXXGGPXGGXAGXPPXTXKXNSXPPXPPAPXXSXQSAPPPXPXXP-TGXXXGTPX 786
PP+T G P G P S PP P P P P P G P
Sbjct: 494 PPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPG 553
Query: 787 XPAPP 801
APP
Sbjct: 554 ATAPP 558
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +1
Query: 604 PKXP--PSTGXXGGPXGGXAGXPPXTXKXNSXPPXPPAPXXSXQSAPPP 744
PK P PS G P G P PP P P Q PPP
Sbjct: 109 PKEPALPSRGTPSLP--SRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPP 155
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/62 (25%), Positives = 17/62 (27%)
Frame = +2
Query: 614 PPPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXPXXXXSPRPPPXRXXXPAAAXGPPXPP 793
PP P V + P P P P SP PP P A P
Sbjct: 937 PPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNP 996
Query: 794 XH 799
H
Sbjct: 997 AH 998
>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 159
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 51 DHSLGIASIDQLS*NVDDLYYSGYRFLLTCAIASAAECENATSL 182
D SL +ASI LS + L Y+ Y+ LL + A + C+N +L
Sbjct: 79 DKSL-VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +1
Query: 664 PPXTXKXNSXPPXPPAPXXSXQSAPPPXPXXPTGXXXGTPXXP 792
PP + S PP PPA S ++ P P T T P
Sbjct: 306 PPTSTSSTSTPP-PPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +1
Query: 616 PSTGXXGGPXGGXAGXPPXTXKXNSXPPXPPAPXXSXQSAPPPXPXXP 759
P+T P AG P T +S P+ S Q++ PP P
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTP 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,079
Number of Sequences: 5004
Number of extensions: 40136
Number of successful extensions: 416
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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