Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_M15
         (950 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.33 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   9.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   9.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 697 PXPPAPXXSXQSAPPPXPXXPTGXXXGTPXXPA 795
           P PP P  S  S  PP P  P G     P  P+
Sbjct: 416 PMPPIPNMSNMSGMPPLPNMP-GSMPTMPTMPS 447



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = +2

Query: 617 PPPGXXGGPXVGXXAXPPPPXKXIPXRPPPRXP 715
           P P     P       PP P +  P   PP  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/38 (26%), Positives = 14/38 (36%)
 Frame = -3

Query: 783 GGPXAAAGXXXRXGGGRGLXXXXGXRGGGRXGIXFXGG 670
           GGP +++      G   G        GGG  G+    G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +2

Query: 350 HXIWXPXGW 376
           H IW P GW
Sbjct: 175 HWIWTPHGW 183


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 27  LEHWLAYWDHSLGI 68
           +EH +AYW   +GI
Sbjct: 192 VEHRVAYWREDIGI 205


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 185 GQ*CCVFAFCRTSYSTSEEKPVTR 114
           G+ CC   F  T Y   + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,909
Number of Sequences: 438
Number of extensions: 6260
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)