Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_M13
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.13 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.39 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   4.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   8.4  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    26   8.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 27/111 (24%), Positives = 32/111 (28%), Gaps = 3/111 (2%)
 Frame = +2

Query: 566  PPDXXHXLXLSXXPFXXXXPXXXXGXAXAXTXPXPAX-PXXPXDRPVGXDXPXLTGTAXP 742
            PP     + +   P     P        A   P P+  P  P         P  +G A P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG-APP 1160

Query: 743  XPXXHPVVPXSXAHRPXXPXAXXPXXAXXDXPXPXX--PXPXPSXXXPPIP 889
             P      P   A     P    P       P P    P P PS   PP+P
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/80 (25%), Positives = 26/80 (32%)
 Frame = +2

Query: 650  AXTXPXPAXPXXPXDRPVGXDXPXLTGTAXPXPXXHPVVPXSXAHRPXXPXAXXPXXAXX 829
            A   P P     P   P+    P +  ++   P   P VP   +  P  P          
Sbjct: 1029 ADAPPIPVPSTAPPV-PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087

Query: 830  DXPXPXXPXPXPSXXXPPIP 889
                P  P P PS   PP+P
Sbjct: 1088 PSGIP--PVPKPSVAAPPVP 1105



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
 Frame = +2

Query: 662  PXPAXPXX-PXDRPVGXDXPXLTGTAXPXPXXHPVVPXSX--AHRPXXPXAXXPXXAXXD 832
            P PA P   P   PV       + T+ P     P  P S   +  P  P A  P      
Sbjct: 961  PRPAAPPSIPPPLPVSNILS--SPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLS 1018

Query: 833  XPXPXXPXPXPSXXXPPIP 889
               P  P P PS   PPIP
Sbjct: 1019 SKAP--PVPLPSADAPPIP 1035



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/80 (27%), Positives = 24/80 (30%)
 Frame = +2

Query: 650  AXTXPXPAXPXXPXDRPVGXDXPXLTGTAXPXPXXHPVVPXSXAHRPXXPXAXXPXXAXX 829
            A   P P+    P   P     P       P     PV P S A     P    P     
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPP----VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP- 1212

Query: 830  DXPXPXXPXPXPSXXXPPIP 889
              P    P P PS   PP+P
Sbjct: 1213 --PSTAPPVPTPSAGLPPVP 1230


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 284 VRVHRANTGRSSNELDRQTTELERR 358
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 694 PPXGPGSPXAXRHRXPPXPXSPXXPSIXCPPAXXAXXXXPXXRT 825
           PP G GS  +     PP P S    SI  PP   +    P  R+
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/74 (27%), Positives = 21/74 (28%)
 Frame = +2

Query: 662 PXPAXPXXPXDRPVGXDXPXLTGTAXPXPXXHPVVPXSXAHRPXXPXAXXPXXAXXDXPX 841
           P  A P  P   P     P     A P P   P+ P   A  P  P       A    P 
Sbjct: 424 PPSAPPSLPPSAP--PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481

Query: 842 PXXPXPXPSXXXPP 883
           P    P  S    P
Sbjct: 482 PAPAAPVASIAELP 495


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 208 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNQ 110
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/50 (28%), Positives = 16/50 (32%)
 Frame = +1

Query: 694 PPXGPGSPXAXRHRXPPXPXSPXXPSIXCPPAXXAXXXXPXXRTPXPSXP 843
           PP    +P    H  PP   S   PS+   P   A    P      P  P
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQPESP 780


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = +3

Query: 732 PXPPXPXXTXXSLXPXPTGRSGXXXXXXXPHXXTXPPXXXRXPPXPAXXPP--SXAAP 899
           P  P P      L P PT  +        P   + PP   + PP P+  PP    AAP
Sbjct: 125 PSAPAPPTPQSELRP-PTS-APPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/63 (25%), Positives = 20/63 (31%)
 Frame = +1

Query: 676 PARXRXPPXGPGSPXAXRHRXPPXPXSPXXPSIXCPPAXXAXXXXPXXRTPXPSXPXXTX 855
           P R   PP  P S      + PP P S   P+    P   +    P   +  P  P    
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV-KSPPSAPSLPSAVPPMPPKVP 202

Query: 856 XXP 864
             P
Sbjct: 203 PPP 205


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
 Frame = +1

Query: 694 PPXGPGSPXAXR-HRXPPXPXSPXXPSIXCPPAXXAXXXXPXXRTPXPSXP 843
           PP  P  P      + P  P  P  PS+  PPA       P    P P+ P
Sbjct: 637 PPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQP-PAVP 686


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 1   LGYPGSWNPRGTVGLLDSLGIASIDQLS*NVDDLYYSGYRFSSLVL*LVRQNA 159
           L Y G W+P     + D +G++SI  L   ++ + +  Y+ S L L ++  N+
Sbjct: 210 LVYTGDWDP---ASIADFIGVSSIPLLD-ELNQMTFGKYQQSGLPLGIIFYNS 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,791
Number of Sequences: 5004
Number of extensions: 42844
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)