Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M12
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 256 1e-68
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 252 2e-67
08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943... 30 2.4
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 29 4.3
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.6
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.4
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.4
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.4
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 28 9.8
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 9.8
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 256 bits (627), Expect = 1e-68
Identities = 120/195 (61%), Positives = 149/195 (76%), Gaps = 1/195 (0%)
Frame = +3
Query: 75 ISATMSGGLDVLALTEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 254
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 255 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 434
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 435 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 614
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 615 LLAREVLRLRG-VLP 656
LLAR VL++RG +LP
Sbjct: 181 LLARMVLQMRGTILP 195
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 252 bits (617), Expect = 2e-67
Identities = 120/191 (62%), Positives = 146/191 (76%), Gaps = 3/191 (1%)
Frame = +3
Query: 93 GGLDVLALT--EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 266
GG AL+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL L
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64
Query: 267 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 446
AAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPR
Sbjct: 65 AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124
Query: 447 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 626
LLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184
Query: 627 EVLRLRG-VLP 656
VL++RG +LP
Sbjct: 185 MVLQMRGTILP 195
>08_01_0950 -
9428506-9428693,9429223-9429595,9430127-9430572,
9430654-9430785,9431129-9431236,9431428-9431533
Length = 450
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +3
Query: 567 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDNAGMXXXXXXXPGPEXSERXN 725
+P + SS+S+GL WW A V L LP N G P P S+ N
Sbjct: 19 VPGDVSSSYSLGLFWW--ANCVSTLTRTLP--NLGTMLDELPIPRPMPSQLQN 67
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 27 VHFASQWHYTRLVVTQISATMSGGLDVLALTEEDVTKMLAATTHLGAENVNFQMETY 197
V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 240 VPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 353 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 460
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 357 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 202
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 182 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 289
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 128 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 307
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 308 VRHLITALRSACCTEVCR 361
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 172 FSAPRWVVAASILVTSSSVRASTSNPPDIVALI*VTTK 59
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 185 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 364
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 365 HRC 373
RC
Sbjct: 211 GRC 213
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 218 WYPCDQLASYLGKTCSGCSCCRSHREP 298
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,369,391
Number of Sequences: 37544
Number of extensions: 582609
Number of successful extensions: 1428
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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