Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M07
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.50
04_03_0904 + 20717005-20718087 32 0.50
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 31 1.1
11_06_0016 - 19284810-19284926,19285527-19286879 31 1.5
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.7
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.5
07_01_0080 + 587674-588510 29 3.5
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 4.6
09_01_0093 - 1360596-1360625,1363562-1364266 29 4.6
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 29 4.6
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 29 4.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.6
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.1
05_05_0355 - 24359265-24359888 28 8.1
03_02_0328 - 7487759-7488340 28 8.1
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 8.1
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.50
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 311 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 147
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>04_03_0904 + 20717005-20718087
Length = 360
Score = 32.3 bits (70), Expect = 0.50
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Frame = +2
Query: 368 PPGDYPLPRPV---YLXTXSXSXDKAXGXXXPPNXSXPXPQXGPTXXAXXAPXXFRSXGX 538
PP P P+P Y T + K PP P P+ P AP ++
Sbjct: 195 PPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAPPTYKPQPK 254
Query: 539 PTPXXTXAXXPSDA-SPHRXP 598
P P T P +P+ P
Sbjct: 255 PNPPPTYKPQPKPTPTPYTPP 275
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAAATTARGLPSPAPRV 402
G A LGW + PD++ L+ TA G PSP +
Sbjct: 62 GLATLGWRHGRPTMPPDLLALSCFLVTAPGQPSPTENI 99
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 650 PXVPXSXSXXGXGXPSXQXAPPXAGXXPXPPRXPXPXP 763
P +P + + G G Q PP P PP P P P
Sbjct: 64 PPMPPASAAAGDGAAPDQEPPPSPPPPPPPPPPPRPAP 101
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 209 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVL 316
V+ H + R S EL+RQ ELER+G L+ G L
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKL 124
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 224 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 135
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_01_0080 + 587674-588510
Length = 278
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 692 PSXQXAPPXAGXXPXPPRXPXPXPP 766
P PP +G P PP P P PP
Sbjct: 92 PPPPPPPPSSGSPPPPPPPPPPPPP 116
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/61 (34%), Positives = 23/61 (37%)
Frame = +2
Query: 329 GGLTWYC*TRLQPPPGDYPLPRPVYLXTXSXSXDKAXGXXXPPNXSXPXPQXGPTXXAXX 508
G W RL PPP +P P P L S + G PP P P GP A
Sbjct: 15 GEAEWPPELRLPPPPPPHP-PPPPPLEPAPPSTPQLRGEASPP--PPPPPPVGPPGAAVV 71
Query: 509 A 511
A
Sbjct: 72 A 72
>09_01_0093 - 1360596-1360625,1363562-1364266
Length = 244
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 707 APPXAGXXPXPPRXPXPXPPG 769
+PP G P PP+ P PPG
Sbjct: 7 SPPLTGKPPVPPQTKLPKPPG 27
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +2
Query: 650 PXVPXSXSXXGXGXPSXQXAPPXAGXXPXPPRXPXPXPP 766
P P P PP P PP+ P P PP
Sbjct: 154 PAPPSPPQDPAPSLPHAPAPPPPQAPAPTPPQAPAPTPP 192
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +2
Query: 650 PXVPXSXSXXGXGXPSXQXAPPXAGXXPXPPRXPXPXPP 766
P P G G P+ PP +G P P P PP
Sbjct: 79 PVNPSERPVQGKGHPAPTMPPPSSGSGHTLPSPPPPLPP 117
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 710 PPXAGXXPXPPRXPXPXPP 766
PP A P PP+ P P PP
Sbjct: 331 PPKAAPPPPPPKGPPPPPP 349
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 96 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 251
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>05_05_0355 - 24359265-24359888
Length = 207
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 765 GGXGXGXRGGXGXXPAXGGAXXXLG 691
GG G G RGG G A GGA G
Sbjct: 123 GGGGVGGRGGGGYGRAGGGAGYAAG 147
>03_02_0328 - 7487759-7488340
Length = 193
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 359 LQPPPGDYPLPRPVYLXTXSXSXDKAXGXXXPPNXSXP 472
L PPP PLPR ++ T S S A PP P
Sbjct: 140 LAPPPSSLPLPR--FVITSSSSSPAAGNKVVPPPPPAP 175
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 692 PSXQXAPPXAGXXPXPPRXPXPXPP 766
P PP P PPR P P PP
Sbjct: 355 PPPPPPPPPPPPPPPPPRPPPPPPP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,126,660
Number of Sequences: 37544
Number of extensions: 444273
Number of successful extensions: 2086
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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