Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP12_FL5_M07
(844 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.003
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 33 0.003
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 29 0.041
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.071
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.071
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.094
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.094
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.094
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.094
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.094
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.094
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 27 0.22
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.38
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 25 0.66
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.66
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.66
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.87
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 1.2
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.5
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 2.0
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 2.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 3.5
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 8.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 8.1
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 8.1
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 8.1
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 81 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 245
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 246 MNWIDKRLSWNAGEW 290
+ W L+W + E+
Sbjct: 88 LMWEQSHLTWKSSEF 102
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.1 bits (72), Expect = 0.003
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 254
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 255 IDKRLSWNAGE 287
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 33.1 bits (72), Expect = 0.003
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Frame = +3
Query: 63 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 221
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 222 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSE 320
+ L+ W D + W+ E+G T L V SE
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSE 100
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 307 WCPRKXLWRPDVVLLNAA 360
+ P + +W PD+VL N A
Sbjct: 96 YVPSEHIWLPDIVLYNNA 113
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 29.5 bits (63), Expect = 0.041
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = +3
Query: 51 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 209
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 210 SESTVRILADLQMNWIDKRLSWNAGEWG 293
T + ++ W D +L WN ++G
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYG 90
Score = 23.4 bits (48), Expect = 2.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 313 PRKXLWRPDVVLLNAA 360
P + +W PD+VL N A
Sbjct: 98 PSEHIWLPDIVLYNNA 113
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.071
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +3
Query: 108 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 272
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 273 WNAGEWG 293
WN E+G
Sbjct: 118 WNESEYG 124
Score = 24.2 bits (50), Expect = 1.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAAATTARGLPSPAPRVSXNGLXL 423
G L P K LW+PD+++ N+A G V+ NG L
Sbjct: 125 GVKDLRITPNK-LWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.071
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +3
Query: 108 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 272
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 273 WNAGEWG 293
WN E+G
Sbjct: 118 WNESEYG 124
Score = 24.2 bits (50), Expect = 1.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAAATTARGLPSPAPRVSXNGLXL 423
G L P K LW+PD+++ N+A G V+ NG L
Sbjct: 125 GVKDLRITPNK-LWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.094
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 293
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAA 360
G L P K LW+PD+++ N+A
Sbjct: 57 GVKDLRITPNK-LWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.094
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 293
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAA 360
G L P K LW+PD+++ N+A
Sbjct: 57 GVKDLRITPNK-LWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.094
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 293
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAA 360
G L P K LW+PD+++ N+A
Sbjct: 57 GVKDLRITPNK-LWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.094
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 293
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAA 360
G L P K LW+PD+++ N+A
Sbjct: 57 GVKDLRITPNK-LWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.094
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 293
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAA 360
G L P K LW+PD+++ N+A
Sbjct: 57 GVKDLRITPNK-LWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.094
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 293
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.4 bits (53), Expect = 0.66
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAAATTARGLPSPAPRVSXNGLXL 423
G L P K LW+PD+++ N+A G + V+ NG L
Sbjct: 57 GVKDLRITPNK-LWKPDILMYNSADEGFDGTYQTSVVVTHNGSCL 100
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 27.1 bits (57), Expect = 0.22
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +3
Query: 108 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 272
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 273 WNAGEWG 293
WN E+G
Sbjct: 97 WNPEEYG 103
Score = 25.0 bits (52), Expect = 0.87
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 289 GAAALGWCPRKXLWRPDVVLLNAA 360
G + + P + +W PD+VL N A
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.2 bits (55), Expect = 0.38
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +3
Query: 81 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 239
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 240 LQMNWIDKRLSWNAGEWG 293
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 313 PRKXLWRPDVVLLNAA 360
P +WRPD+VL N A
Sbjct: 102 PSDHIWRPDIVLYNNA 117
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.4 bits (53), Expect = 0.66
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 254
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 255 IDKRLSWNAGEWGCSTWLVSSE 320
D RL++ G T V SE
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSE 88
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 313 PRKXLWRPDVVLLNAA 360
P +WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
Score = 24.2 bits (50), Expect = 1.5
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 108 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 272
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 273 WNAGEWG 293
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 313 PRKXLWRPDVVLLNAA 360
P +WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
Score = 24.2 bits (50), Expect = 1.5
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 108 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 272
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 273 WNAGEWG 293
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.0 bits (52), Expect = 0.87
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 159 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 293
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 313 PRKXLWRPDVVLLNAA 360
P +W+PD+VL N A
Sbjct: 104 PPDKVWKPDIVLFNNA 119
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.6 bits (51), Expect = 1.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 313 PRKXLWRPDVVLLNAAATTARGLPSPAPRVSXNGLXL 423
P LW+PDV++ N+A G V NG L
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCL 137
Score = 24.2 bits (50), Expect = 1.5
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 60 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 224
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 225 RILADLQMNWIDKRLSWNAGEWG 293
L++ W D + WN ++G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 1.5
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 254
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 255 IDKRLSWNAGEWGCSTWLVSSE 320
D RL++ G T V SE
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSE 88
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 162 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 290
+V L+LH ++ E + + W D L WNA E+
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEF 74
Score = 23.4 bits (48), Expect = 2.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 313 PRKXLWRPDVVLLNAA 360
P +WRPD +L N A
Sbjct: 83 PYNRVWRPDTILYNNA 98
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 319 KXLWRPDVVLLNAAATTARGLPSP 390
K +WRPD NA + T + + P
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIP 139
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.0 bits (47), Expect = 3.5
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Frame = +2
Query: 650 PXVPXSXSXXGXGXPSXQXAP------PXAGXXPXPPRXPXP-XPPG 769
P + G P Q +P P G P P + P P PPG
Sbjct: 7 PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 305 PSAAAPFPCVPTQS 264
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 58 QVRRNGNQNNISRRHFMTS 2
++ RNG N + RRH + S
Sbjct: 167 RIYRNGTVNYLMRRHLILS 185
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 58 QVRRNGNQNNISRRHFMTS 2
++ RNG N + RRH + S
Sbjct: 167 RIYRNGTVNYLMRRHLILS 185
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 58 QVRRNGNQNNISRRHFMTS 2
++ RNG N + RRH + S
Sbjct: 218 RIYRNGTVNYLMRRHLILS 236
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 58 QVRRNGNQNNISRRHFMTS 2
++ RNG N + RRH + S
Sbjct: 167 RIYRNGTVNYLMRRHLILS 185
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,587
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 58
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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