Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP12_FL5_M06
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0530 - 6928528-6929500,6929514-6930964                           32   0.63 
12_02_1174 - 26696869-26698191                                         29   3.4  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    28   7.8  

>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 78  VSPHLCYS*CGXMRKR-NITGPS*IESLPPKVXT 176
           +SP+LCY+ C   RK+  ++ PS    LPPK+ T
Sbjct: 475 LSPNLCYAFCITSRKKTQLSQPSNNSGLPPKIFT 508


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -2

Query: 387 PPXVXGEXPPKXXXPPXPRGYKKRFFXXPKLFEXIPXKPPRGDXES 250
           PP      PP    PP P+   +R++  P      P KP  G   S
Sbjct: 288 PPEPTKPKPPPPSPPPPPQQPSQRYWTPPPAITPEPAKPAAGKPTS 333


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 679 GGGGXPXPXXXXXXPPXXGXXPPPP 753
           G GG P P      PP     PPPP
Sbjct: 260 GSGGPPRPPPPQVPPPPPQAPPPPP 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,116
Number of Sequences: 37544
Number of extensions: 425716
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)